RNA id: XM_039803676.1


Basic Information

Item Value
RNA id XM_039803676.1
length 682
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC120560812
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4226036 ~ 4227032 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agGAGCACCCTCATGCTGATTGGAAAGGCTTTTAGATTTGGTGGACGTGTCAGGTCTGGTGTTATCAAACCGTTGGCCTGTCTTTTGGCCTCCCAGCAACATGGCCAAGAGCAAGTTTGAGTACGTGCGCAAATTTGAAACAGATGACACGTGTCTACGAAACTGCTACATTGTTGTGAGACTGGACGGGCGCAACTTCCACAAGTTTGCAGAGCAGCACGAGTTTCCAAAGCCCGATGACAACAGAGCCTTGGGTCTGATGAGCCGAGTGGAAGAGCTCGAGGATATCGTCATCGCTTCCGGTCAAAGTGAGGAGTTCAGCTTTGTTTTCAAGAGGACCTCCACCTGGTTTAAAAGACGAGCCAGTAAGCTCATGACCCTTGTGGCCTCCCAGTTCTCCTCCTCGTATGTGTTTTACTGGAAGGAGTTTTTTGGGCAACAGCCCCTCTTGTACCCCCCAGGTTTTGATGGACGTGTGGTCACAGACTACCTCAGCTGGAGGCAGGCAGATTGTCACATAAATAATTTGTACAACACAGTGTTTTGGACTTTAGTACAAAAGGGGGGACTCACCACAGCCCAGGCAGAGGATCGCttaaaagtgaaagcaaaacaCAACCTTAAGTTAAttaatatgtgtttgtgtgtatatgtatttatacactATATGTTATAATAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79389 lncRNA upstream 92972 4132848 ~ 4133064 (+) True G59093
TU79333 lncRNA upstream 264717 3961060 ~ 3961319 (+) True G59042
TU79323 lncRNA upstream 329795 3895670 ~ 3896241 (+) True G59032
TU79324 lncRNA upstream 334183 3891045 ~ 3891853 (+) True G59033
XR_005639569.1 lncRNA upstream 388357 3837307 ~ 3837679 (+) True LOC120561177
TU79435 lncRNA downstream 80887 4307919 ~ 4329460 (+) True G59132
TU79470 lncRNA downstream 122534 4349566 ~ 4349919 (+) True G59163
TU79489 lncRNA downstream 206061 4433093 ~ 4435260 (+) True G59174
TU79492 lncRNA downstream 234332 4461364 ~ 4462824 (+) True G59175
TU79554 lncRNA downstream 326989 4554021 ~ 4555654 (+) True G59217
XM_039804152.1 mRNA upstream 17537 4199523 ~ 4208499 (+) True si:dkey-3h3.3
XM_039804151.1 mRNA upstream 17537 4200851 ~ 4208499 (+) False si:dkey-3h3.3
XM_039802090.1 mRNA upstream 336381 3869033 ~ 3889655 (+) True ccdc125
XM_039802089.1 mRNA upstream 336381 3869033 ~ 3889655 (+) False ccdc125
XM_039802091.1 mRNA upstream 336381 3869033 ~ 3889655 (+) False ccdc125
XM_039803329.1 mRNA downstream 44472 4271504 ~ 4343670 (+) True pdzd2
XM_039803330.1 mRNA downstream 44472 4271504 ~ 4343670 (+) False pdzd2
XM_039803331.1 mRNA downstream 44472 4271504 ~ 4343670 (+) False pdzd2
XM_039802033.1 mRNA downstream 130062 4357094 ~ 4388795 (+) True npr3
XM_039802795.1 mRNA downstream 210501 4437533 ~ 4456244 (+) True araf
TU79382 other upstream 108405 4117279 ~ 4117631 (+) True G59086
TU78941 other upstream 1346292 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 4013666 210742 ~ 212370 (+) True LOC120560799
TU79482 other downstream 197109 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 205139 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 205636 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 303078 4530110 ~ 4531165 (+) False mrpl41
TU79671 other downstream 826234 5053266 ~ 5351131 (+) False fbrsl1

Expression Profile