RNA id: XM_039803712.1


Basic Information

Item Value
RNA id XM_039803712.1
length 2224
RNA type mRNA
GC content 0.51
exon number 16
gene id si:dkey-220o5.5
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15343423 ~ 15363941 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGAAAGAAAGAGAGTTCACTGAGGAGGAAATCTGTTCTCTGTTTCTGTTGCTTGGTGTTTTGGACTCTGGAGCAGAGAAATGACAGTGAAGATCAGCAGCAACTGagacgacagacagacatggaCAAACAGAAAGTGCTGTCCAAGCTGATCTGGGATCTGCAGTCCTTCCTGTCTGTTCTGGACTCTGAACAGAACCTGAGTTACATCGCTCAGTCTCAGAAGAAATCCATCTCAGAGCTGCTGTCCAAACTGCAAACAAACGACACTCCtgTGGAAGATGCTGAGTACATGATCATGAGCTGTCCATCATCGTCTCCTAGCAACGAGCTGGCAGTCACACCTGGGACAGGTGTCCAGTCTGAGCTGGTCTTAAATCAGGACTCATCTGTGTGGCTGACAAAAGGGgGCCCTGAGGTGCCACCCCTACCTCCAGGAGGTCTTGGAGGggatgaggatgatgaagaTACCTACGAGGAGGCGGAACCTTACCTACCAGACACAACCACTAACACTGAGAAGGCGGAGTCAGACAGCAGTCACTACGAGTCGTACGGGgaggaagatgatgatgatgatgatgatgatgagaagcCTGTGAAGGACAGAGCTCACTACATCCAATGGAGCGCCTCCCAGCCCTGCCTAAGACCCATCCCCGAGTCCCGCCTCTGTGGTTACCTGTGGAAGAGGAAGTGGCTCGGACAGTGGACCAAACAGCTGTTCATCATCAGGAGCGATGTGATGCTGtgttaTAAGTGTGCTCAGGACCTGCTGCCTCAGCTGGAGTTGAACCTGCGCGGCTGTCAGCTCGTCTACAAGTCAAAGAACAATAGGAAGATCCAGCACCAGCTCAAACTGGTGTTACTGGGCTCAGAGACACTGGTGCTGGGCTACAGCAGCTTCCAGCAGGCCGACGAATGGAGGAGGgtgaTAGAGGAGGTGAGTGCTGGGGGTGAAGTGGAGACTCAGAGCTCGTTGTCTCTGATCAGATCAGACCGGCCGCTGTCCTGCAGGTCCAGTACAGTCCAGTTTGACACTGAGGAAGAGAAACCTTCAGCTGGCTGCAGCCTCAACAAAGACAAAGGTTTCCTGAGCGTGTTGATGAACTGTCAGTGGCAGAGTTTACTGTGTCAGGTGGAGGCAGGTCTACTCAAGATGtttggagaggaggagaaggaggaggaggtagagaggtcgcctcaGTACACCGTCCAGCTCAGAGGGTGCGAGGTCAGAGGCGGGCCTGACACCGACCACTCCTACAGGATCACACTGAGCATGCTCGGTGACCAGGTGGCTGTGCTGGAGGTGAGTAGTTCAGATGAAAAGGAGCGATGGCTAAAGCTGCTGCAGGACGGAGCTGCCAATCACAGTCGCCAAGACAACAACGCACAGATCAACACAGGTGGAGCTCTCAGTGGGCTGCAGACTCGAAAGTTTCCCACCTCCAACACCTACATGGACGACCCCTTCCACCTTAGTGGAGCAGGCCAAGACCAGCCCATCTACTCCAACACCTCCATACTGGAGCTCATGCTCCACAGCTCTCAGGATTCAGTTCACTGCAGCTCGGTGTCGTCCAGAGACTCAGTGGCCTACAGCAACACCGTCTTCACCAGCCACAACAGGAAGTCGGTGGAAGTGGAACGAGGCGTTCAGAAGCTGGAGTTAACGGGGAAGAGGACGGTGCAGCTGAGAGCGGGGTCAGAGATTAACCTGGCGTCTGTCGGAAAGCAAAACAAACGCACCTCTTTTAGACAGTCGCTGGCCATCTGCGGTGAGCGTGCTCAGGCGGGTTTCCTGAACCCTCTGCTGCGACGGACGGCCTCAGCTAAAAACTCTCTCAGACGAGCTCCTTCAGCACTGTTCATTGAACATGGGAAGGTTTTCCAGAGGAGGAAGGAATGGGAAACCAAAGCTGCTGCTTGATACCAACCgtctgtcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcattatcatcatcatctacaAACAGTCCTCTCAATTGGAGAACTTTCTGACATGCTTTACAATGAGTGAAGTTACTCATTACGGTCAGAGGTGGAGAAAGTATATTTTATTCCataaaagtagtaataccacagtatagaaatactctgttacaaatGAAAGTCCTaatcttacttaagtaaaagtacaaaagtattagcatcaaagTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82801 lncRNA downstream 37356 15303729 ~ 15306067 (-) True G61813
TU82799 lncRNA downstream 89518 15252693 ~ 15253905 (-) False mfsd14bb
TU82716 lncRNA downstream 163004 15152994 ~ 15180419 (-) True G61742
TU82713 lncRNA downstream 213460 15106265 ~ 15129963 (-) True G61740
TU82676 lncRNA downstream 274530 15068542 ~ 15068893 (-) True G61711
TU82830 lncRNA upstream 61610 15425551 ~ 15427495 (-) True G61837
TU82900 lncRNA upstream 94892 15458833 ~ 15462921 (-) True G61894
XR_005639525.1 lncRNA upstream 177891 15541832 ~ 15544351 (-) True LOC120560849
TU82980 lncRNA upstream 409738 15773679 ~ 15777138 (-) True G61956
TU83024 lncRNA upstream 574035 15937976 ~ 15939248 (-) True G61993
XM_039803709.1 mRNA downstream 26361 15309058 ~ 15317062 (-) True LOC120560836
XM_039803710.1 mRNA downstream 26371 15309058 ~ 15317052 (-) False LOC120560836
XM_039803704.1 mRNA downstream 65239 15252615 ~ 15278184 (-) True mfsd14bb
XM_039803701.1 mRNA downstream 110730 15224970 ~ 15232693 (-) True LOC120560831
XM_039803700.1 mRNA downstream 125001 15216552 ~ 15218422 (-) True sdhaf1
XM_039803719.1 mRNA upstream 5085 15369026 ~ 15402324 (-) False LOC120560838
XM_039803715.1 mRNA upstream 5085 15369026 ~ 15402324 (-) False LOC120560838
XM_039803718.1 mRNA upstream 5085 15369026 ~ 15402324 (-) False LOC120560838
XM_039803720.1 mRNA upstream 5085 15369026 ~ 15402324 (-) False LOC120560838
XM_039803713.1 mRNA upstream 5085 15369026 ~ 15402324 (-) True LOC120560838
TU82789 other downstream 110734 15225095 ~ 15232689 (-) False LOC120560831
TU82785 other downstream 125014 15216550 ~ 15218409 (-) False sdhaf1
TU82671 other downstream 302059 15036979 ~ 15041364 (-) False tti2
TU82656 other downstream 325710 15013533 ~ 15017713 (-) False LOC120559984
unassigned_transcript_258 other downstream 374846 14968496 ~ 14968577 (-) True trnas-gcu_3
XR_005639521.1 other upstream 5886 15369827 ~ 15402324 (-) False LOC120560838
XR_005639520.1 other upstream 5886 15369827 ~ 15402324 (-) False LOC120560838
TU83104 other upstream 1140685 16504626 ~ 16505067 (-) True G62064
TU83119 other upstream 1184681 16548622 ~ 16550256 (-) False LOC120561322
TU83120 other upstream 1184681 16548622 ~ 16551175 (-) False LOC120561322

Expression Profile