RNA id: XM_039803713.1


Basic Information

Item Value
RNA id XM_039803713.1
length 2290
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC120560838
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15369026 ~ 15402324 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACATACGCGCGCACACGCTCACGAGCGCACTCAGATTATATTTGTGAGAGAACGCAGAGAGAAACAGTTGATGACGGAGCTGCATGCTGGATCTTTCTGACAAACACCGGTAACAACTAACAGACTGGTGATCTGAAGAATCTGAGCTGCAGCAAAATCAACAGTAAGGATGTATTGATCAGGCTGCAGAGCCCTGAAGACTAACATTTACAGACATGATCCTTTATTCTCCCTGAggaactgaccaatcagcagccaGGATGATGCCCAAGcagcAGCTGGCTCAGACGTCTCCAGGGAGTGTGTTGTCGCTGAGAGGGCCCAGTGTCCCAGGATCCCCTGCAGCCGCCATTgtggcCAGAGTGGAGGACGGGGTTATCGGCTATAAGGATTTGGCAGCGTTACCAAAAGACAAAGCCATCCTGGATATAGAGAGACCAGATCTGATGATCTACCACCAGCACTACAGCTACAGCCCACTGGAGAGGTCCTTGTCTCCTcgctccatctctcctcctccctccccggAGAAGGAGTGCAGGGAGTGGCTGGGGAACCGCTCTCCTGGAGGTTCCTCCCCTTGTTCCACCATCCAGACCAGcaggacacacagcacacacacaccaccaacaccaaacacaccaaacacaccacacacaccaaacacaccaaacacacactcttctgGTACCAAGAGCACCATGCAGCACTTCCACAGGCCTGAAAATGGCTCCAACATCTATAAGAAGCCTCCCATCTACAAACAAGatatgtgtgtgtcctctcaGCTTCCTCAGGGGAAACACATTGAGGATCTGATCATTGAGTCTTCAAAGTTTCCAGCAGCTCATCCTCCAGACCCCAACCTGCCCTCCAAGATAGAGACCGAATACTGGCCCTGCCCCCCCTCCCTGGCTGTGATTGAGAAGGAGTGGAGGAAGAAGGATCAGAGAGATGAAGATGTAGAGGAGGATGGAGAGCTGGATGATGAGCTGTGGGGACTGAGAGCGCTTCAGAAACAAGAACTGAACAAGatTCAGTCTAATCTGGGGAAAATCATCCTTAAGGAGGAGTTGGATaaatctgcagctcctctgAGGAGGAAAACTCGCTCACTACCGGACCCACATCAGCACGCTGGGTCCAATGCCTCCAAGTCTGTGTATTTCCCAGCATCTTCTAAGAGCGGCCTGTCCAGGGTGAGTGCTGCTGAACAGAAACGTCCAATCACAGCAGAGTTTACAGAAGATGGTGAAGaacatgtttctgtttgtttgcagCTGCAGTCAGCAGAATTCAGCTCGTCTGAGAAAACTCATGCAGATATTCAGaacGGAGATTCCAGGATGGACAGAGGAAACTCTCTCCCCAGCATGCTGGAACATAAGATATGCCCTTATGAGATGCTGGTGGTGACCCATAGAGGGCGACACAAACTGCCCCCTGGTGTGGACAGAACCAGGCTGGAGAGACACCTCTCGCAGGAGGAGTTCTTCAGTGTTTTCGGGATGTCCATCGAGGAGTTTGACCGCCTCTCTCTCTGGAAGAGGAACAACCTGAAGAGGAAAGTCTGTCTCTTCTGACACTGCTGAGACCGCATCTCTCACATTCCCCCTTGCTCTTCCTGGATCACTTCAGGGTCCTGAAACCACACAGACTCATTATTAtcagcaccaccaccaccaccaccatcatcatcacagtCTGGCGCTCAGTGAGACGTCAGGTTTGATTCACAGTGAAGGTTTGAATGAAAGCACAGAGTGGTTTTAGATTCCTGCTGCACACATGAACTCCGCCTGCAGAGCTGCAGAACTTCTGTTTAATACGCTTCAGTTTCTAGATGtctgtgtaaatgttttaataaCAAAACTAAAGAGCGAGCACAAAGAATCAACCTGCAGGTCAAGATGTGGAGCACAGAGCAGGTTTAGGTAAAAAACTCCACCTGAGAGCAAAGCAAACTCCAGTGGGTTTAAACTGGGAGTGAGGAGCCTGGTCACACCAGCATTTTTAACAGCAGACATTTGagctacattcatttaatttCGGAGAAATCGCTGCAATCAGTAGATTCTCCGCAAATTAAATCTGTGATCGTTAAAGTTCAAGCTTGGGCAACTTTAACAAGCAAATTTGCTTTGAAACTGTATGACAGTCCAGAGGATACGGAGCTCAATGCACCGTAGTCTaaatccttgacgttccacttccgggattgctctgttccCACCGGAaattgccttgggcttcctttgtgttggcattttaaactccggttgatttgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82801 lncRNA downstream 62959 15303729 ~ 15306067 (-) True G61813
TU82799 lncRNA downstream 115121 15252693 ~ 15253905 (-) False mfsd14bb
TU82716 lncRNA downstream 188607 15152994 ~ 15180419 (-) True G61742
TU82713 lncRNA downstream 239063 15106265 ~ 15129963 (-) True G61740
TU82676 lncRNA downstream 300133 15068542 ~ 15068893 (-) True G61711
TU82830 lncRNA upstream 23227 15425551 ~ 15427495 (-) True G61837
TU82900 lncRNA upstream 56509 15458833 ~ 15462921 (-) True G61894
XR_005639525.1 lncRNA upstream 139508 15541832 ~ 15544351 (-) True LOC120560849
TU82980 lncRNA upstream 371355 15773679 ~ 15777138 (-) True G61956
TU83024 lncRNA upstream 535652 15937976 ~ 15939248 (-) True G61993
XM_039803712.1 mRNA downstream 5085 15343423 ~ 15363941 (-) False si:dkey-220o5.5
XM_039803711.1 mRNA downstream 5085 15343423 ~ 15363941 (-) True si:dkey-220o5.5
XM_039803709.1 mRNA downstream 51964 15309058 ~ 15317062 (-) True LOC120560836
XM_039803710.1 mRNA downstream 51974 15309058 ~ 15317052 (-) False LOC120560836
XM_039803704.1 mRNA downstream 90842 15252615 ~ 15278184 (-) True mfsd14bb
XM_039803721.1 mRNA upstream 1524 15403848 ~ 15408301 (-) True rsph14
XM_039803722.1 mRNA upstream 6872 15409196 ~ 15415459 (-) True srp19
XM_039803727.1 mRNA upstream 69746 15472070 ~ 15502444 (-) True LOC120560845
XM_039803729.1 mRNA upstream 102050 15504374 ~ 15514901 (-) True LOC120560846
XM_039803731.1 mRNA upstream 167375 15569699 ~ 15577254 (-) True LOC120560851
TU82789 other downstream 136337 15225095 ~ 15232689 (-) False LOC120560831
TU82785 other downstream 150617 15216550 ~ 15218409 (-) False sdhaf1
TU82671 other downstream 327662 15036979 ~ 15041364 (-) False tti2
TU82656 other downstream 351313 15013533 ~ 15017713 (-) False LOC120559984
unassigned_transcript_258 other downstream 400449 14968496 ~ 14968577 (-) True trnas-gcu_3
TU83104 other upstream 1102302 16504626 ~ 16505067 (-) True G62064
TU83119 other upstream 1146298 16548622 ~ 16550256 (-) False LOC120561322
TU83120 other upstream 1146298 16548622 ~ 16551175 (-) False LOC120561322
TU83121 other upstream 1146298 16548622 ~ 16550256 (-) False LOC120561322
TU83278 other upstream 1721672 17123996 ~ 17124477 (-) True G62194