RNA id: XM_039803723.1


Basic Information

Item Value
RNA id XM_039803723.1
length 1925
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC120560841
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15416456 ~ 15430582 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTCTTTTAGCAAATCGGCTAGTCGCTGCGACGCCGCTGCTTCTCGCCGCTACGGTCTGTCGCATCGGGGACATTCGACCCTTTTGACACCCCCGGCCAATATAATCTGTTTTTTAACGTTGGTAACTTGACGTAGGTAATTTATCATGATAGAAGTTGACCGAACGGCTCGTTAATTTTAGGTCTTATCGTTGATTTTCCAACCGATTTGGCGGGACTAGATCGGGTTAACAATACGACGAGCTAAAGGCTAAAGCAGCTAGCTTTGAGACTCAGGCCAGTTTTTTTTCAGGTAGCTAACACAGCTAGCTCAGCGAGCTACCGCGGCTGTCATGGAAGACAAATCTTTTACTAAAGATTTAGACCAATGGATCGAACAGCTAAATGAGTGTAAGCAGCTCTCGGAAAACCAAGTCAGGACACTCTGCGAGAAGGCCAAGGAGATTCTGACCAAGGAGTCCAACGTTCAGGAGGTGCGATGCCCCGTGACGGTTTGTGGCGACGTCCACGGTCAGTTCCACGACCTGATGGAGCTGTTTAAGATCGGAGGCAAGTCTCCCGACACCAACTACCTGTTCATGGGAGACTACGTCGACAGAGGCTACTACTCTGTGGAGACGGTCACTCTGCTCGTCACGCTAAAGGTTCGTTTCCAGGAGCGAATCACCATCCTGCGAGGGAACCACGAGTCGCGGCAGATCACGCAGGTCTACGGCTTCTACGATGAGTGCCTGAGGAAGTATGGCAACGCCAATGTCTGGAAGTACTTCACAGACCTGTTTGACTACCTGCCTCTCACCGCGCTGGTGGACGGACAGATCTTCTGTCTCCACGGAGGTTTGTCTCCCTCCATAGACACTCTGGATCACATACGCGCTCTGGACCGCCTGCAAGAAGTCCCACATGAGGGCCCGATGTGTGACCTGCTGTGGTCAGACCCTGATGATCGTGGTGGGTGGGGCATCTCTCCCCGAGGTGCCGGCTACACCTTCGGACAGGACATCTCTGAAACCTTTAACCACGCCAACGGCCTCACTCTGGTGTCCCGCGCCCATCAGCTGGTCATGGAGGGCTACAACTGGGGCCATGATAAGAATGTGGTGACCATCTTTAGTGCTCCAAACTACTGTTACCGCTGTGGAAACCAGGCAGCCATCATGGAACTGGACGACACTCTGAAATACTCTTTTCTTCAGTTTGACCCCGCCCCCCGCCGTGGCGAGCCCCACGTGACCAGACGCACTCCTGACTACTTCCTGTGAATGTCCAAAACCATCCCTGTCAATCATCTACAAACCTCCACCCACCTAACCCCCCACCTCCCCATTTTGGATGGAAAGAagatattaataaaataatactgTACCAGGGAGAATAGAAATAAACAATTGGCTGATGAACCaagattttaacaaaaagagaaaCCTAAAGAACGGCCCCCTCTACAGTCTTGTTTTCAATATGCTGTCATTAATGCTGTGCTTCTGGGGGAAAAACTATGatctgttttcttttgttttgtttattacaTGTTTGAAAACGAGATAATAAAACTACCAACGTGGACCAAATGTGCCATATTCTGATCCTTTTTACAACATGTACAACGCGCGCAATGTTTCtttctttagtttttgtttctgttttttttggttgttttttagACCAGCACTATAACCCTACCTACCTGACAACGTCACCACCACACCACACTTCTTCTTCATTGCATATGTGCTTTTTTCTGTTGCaagaataattttaaaaaaggaggggaaaaaaggaagaaaaaaaaattgcttcaAGTagtacagctgtcagttttagCTGTCCAGGCTGCAGCCGGTGGTCATCTCAGCAagtatattactgtaatttGAATAAAGACAACAGAcgtatgaaataaaaatgtcctaTTGACAAACTA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82761 lncRNA upstream 40454 15374777 ~ 15376002 (+) True G61782
TU82736 lncRNA upstream 63831 15249744 ~ 15352625 (+) False spinb
TU82749 lncRNA upstream 101878 15306447 ~ 15314578 (+) True G61770
TU82733 lncRNA upstream 175014 15240416 ~ 15241442 (+) True G61757
TU82730 lncRNA upstream 191487 15224547 ~ 15224969 (+) True G61754
TU82867 lncRNA downstream 101526 15532108 ~ 15532796 (+) False LOC120560526
TU82871 lncRNA downstream 102285 15532867 ~ 15572973 (+) True G61867
XR_005639523.1 lncRNA downstream 108773 15539355 ~ 15539844 (+) True LOC120560847
XR_005639524.1 lncRNA downstream 110287 15540869 ~ 15545477 (+) True LOC120560848
TU82947 lncRNA downstream 327008 15757590 ~ 15777141 (+) False mctp1a
XM_039803706.1 mRNA upstream 110356 15298400 ~ 15306100 (+) False mak16
XM_039803708.1 mRNA upstream 110356 15299235 ~ 15306100 (+) True mak16
XM_039803705.1 mRNA upstream 120229 15281965 ~ 15296227 (+) True spinb
XM_039803702.1 mRNA upstream 164117 15242850 ~ 15252339 (+) True lrrc2
XM_039803703.1 mRNA upstream 164117 15242850 ~ 15252339 (+) False lrrc2
XM_039803724.1 mRNA downstream 1126 15431708 ~ 15434935 (+) True zgc:101664
XM_039803725.1 mRNA downstream 5159 15435741 ~ 15467408 (+) True LOC120560844
XM_039803726.1 mRNA downstream 21471 15452053 ~ 15467408 (+) False LOC120560844
XM_039803140.1 mRNA downstream 78340 15508922 ~ 15520405 (+) True LOC120560525
XM_039803141.1 mRNA downstream 88198 15518780 ~ 15532628 (+) True LOC120560526
XR_005639607.1 other upstream 117813 15298542 ~ 15298643 (+) True LOC120561495
TU82454 other upstream 333008 15078874 ~ 15083448 (+) True G61535
TU82426 other upstream 465835 14939393 ~ 14950621 (+) False cntrl
TU82399 other upstream 621854 14786011 ~ 14794602 (+) False G61514
XR_005639551.1 other upstream 630347 14774544 ~ 14786109 (+) False surf4l
XR_005639522.1 other downstream 1126 15431708 ~ 15434443 (+) False zgc:101664
unassigned_transcript_259 other downstream 187303 15617885 ~ 15617956 (+) True trnac-gca_19
unassigned_transcript_260 other downstream 188162 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_261 other downstream 188491 15619073 ~ 15619144 (+) True trnac-gca_21
TU82943 other downstream 332532 15763114 ~ 15777141 (+) True mctp1a

Expression Profile