RNA id: XR_005639522.1


Basic Information

Item Value
RNA id XR_005639522.1
length 1134
RNA type transcript
GC content 0.53
exon number 4
gene id zgc:101664
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15431708 ~ 15434935 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTCCGGGAAGCGCACAACACAGAATTGGGATACAGCTTGTTAGTTGATTGGAACTTTACTCCTTGGCTGTTGAGAGAGAACCACAAACGGCTGATTTAAAGACTCCTGCCGTGTTCCCATCATTCATTGCATTGTCTAGCTAAATCAACCTCATCatgaggaggaagatgaggaggagcgTGGTGCAGTCAGTCATTTGATCTGTATGGATGATGTGGTTCTGCACTATCAGCCTGGATCAGCTGCTGGGTTCAGCTGTCTGttagagaggacagagaagctTCTGGTGACTTTCCCCTGCCGGACACCTCAAGTCTTCAGCCCCTGGTCCCCCAGCGCCGCAGACCGCCACCTGCCCATCAGACCGGCCAAACCAGCTCCCATCATCACATGCTCACGGGATTTACTCGTCTCTGACAGcaggacacacactgacacagcacAAATCCAACTGCAAGAACCTGAAGTTGACAGTCTTATTGCTGAAAGACCTCATAACCAACCATCAACACCAGCTGAAAATCCACAAGAACCTAAAGATGCCTCCTGCGTTTCAGAGACCCAAAACCCTCTCCTCCCAGAGAGAGAGGTCACCAGACTGCCTCCTAAAAAACACAAAGGCAAAGACGGCTTTCCTGTCACTGACTCGCCGGTCAAACGGTCCTGGAGCATCTTTACACATAAAGGAGTTCTGCTGCAGAGCTCCCAGTCGCTGTCCAAGCAGTTCCGTAACATGGTGTCGACCCACAGGCTCCACCTCCACCAGAGGGCCAAATGGGTGATCTGTCAGCACAACTGTGGGGCGGCCAGAGACATTGAACAGGCTTTAGAGCGAGACAGTAGATGTGGGGAGAGAGGAAGGTATGAGATGCAACTCCGTTCCCCTGGACCGGCGGGAATCTTACCGTGGACGTTGGGGTGGTGTGACATGCGCCCTAAACATTAGGCTAcagtcagcatgctaacaggctcacaatgacaatgctaacatgctgatctTTAGAAGGTGTGGCGGGCTCTGAGCCGGGCCATGCAGAGCTCCAGGCTGCAGACGTGTAACGCCAACATCCAGAGGGAGCGTGCGGAGATCTGGGTGTTTTGTGACGTTATCCAGTCCGAGCAGGTGGGACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82761 lncRNA upstream 55706 15374777 ~ 15376002 (+) True G61782
TU82736 lncRNA upstream 79083 15249744 ~ 15352625 (+) False spinb
TU82749 lncRNA upstream 117130 15306447 ~ 15314578 (+) True G61770
TU82733 lncRNA upstream 190266 15240416 ~ 15241442 (+) True G61757
TU82730 lncRNA upstream 206739 15224547 ~ 15224969 (+) True G61754
TU82867 lncRNA downstream 97665 15532108 ~ 15532796 (+) False LOC120560526
TU82871 lncRNA downstream 98424 15532867 ~ 15572973 (+) True G61867
XR_005639523.1 lncRNA downstream 104912 15539355 ~ 15539844 (+) True LOC120560847
XR_005639524.1 lncRNA downstream 106426 15540869 ~ 15545477 (+) True LOC120560848
TU82947 lncRNA downstream 323147 15757590 ~ 15777141 (+) False mctp1a
XM_039803723.1 mRNA upstream 1126 15416456 ~ 15430582 (+) True LOC120560841
XM_039803706.1 mRNA upstream 125608 15298400 ~ 15306100 (+) False mak16
XM_039803708.1 mRNA upstream 125608 15299235 ~ 15306100 (+) True mak16
XM_039803705.1 mRNA upstream 135481 15281965 ~ 15296227 (+) True spinb
XM_039803702.1 mRNA upstream 179369 15242850 ~ 15252339 (+) True lrrc2
XM_039803725.1 mRNA downstream 1298 15435741 ~ 15467408 (+) True LOC120560844
XM_039803726.1 mRNA downstream 17610 15452053 ~ 15467408 (+) False LOC120560844
XM_039803140.1 mRNA downstream 74479 15508922 ~ 15520405 (+) True LOC120560525
XM_039803141.1 mRNA downstream 84337 15518780 ~ 15532628 (+) True LOC120560526
XM_039803730.1 mRNA downstream 124061 15558504 ~ 15562994 (+) True LOC120560850
XR_005639607.1 other upstream 133065 15298542 ~ 15298643 (+) True LOC120561495
TU82454 other upstream 348260 15078874 ~ 15083448 (+) True G61535
TU82426 other upstream 481087 14939393 ~ 14950621 (+) False cntrl
TU82399 other upstream 637106 14786011 ~ 14794602 (+) False G61514
XR_005639548.1 other upstream 645599 14774544 ~ 14786109 (+) False surf4l
unassigned_transcript_259 other downstream 183442 15617885 ~ 15617956 (+) True trnac-gca_19
unassigned_transcript_260 other downstream 184301 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_261 other downstream 184630 15619073 ~ 15619144 (+) True trnac-gca_21
TU82943 other downstream 328671 15763114 ~ 15777141 (+) True mctp1a
XR_005639530.1 other downstream 1033880 16468323 ~ 16475897 (+) False LOC120560890

Expression Profile