RNA id: XM_039803725.1


Basic Information

Item Value
RNA id XM_039803725.1
length 4968
RNA type mRNA
GC content 0.47
exon number 17
gene id LOC120560844
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15435741 ~ 15467408 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTTGTAGTCTAGCTGCAAAAATCAGACGGCTGATACATGAgtattttcttattatataatATCGATCTAAATATCGGAATATTTCAGTTTGGAGGACATCTAGACGTCGTGTATGTTCGTTGCTCCACCATGGCGTCCGTTCTTCGCCTTTCTGGAGATTTTAATTGGTGAAAAAGTAAAGAAAGGTTGATTCTTCGTCTCCCCAGATGTGGCCACCACCTCTGCTGAGACTTCTGTTCATGAATGGCGAAGATGCTTTGATTGGGCGGCTGTGGCTTGGCCTGGAGGGATGACAGGACTTAAGCAGACATGGAGAcaggagagacacacagacagctgGAGACGCCATATTTAGTCAGCCTACATTCTCCTCATTAAATCTACTCAGGATCACAGAAAAGcctatttttctatatttttttctattcagaGCTGTTTTTGTTAGTTATAGTAAAGCCATACTCAGCTGTCAGCCTTCACGATGACCTCTGAGGGCTTTCAGTACCGAGCGCTGTACGACTacaagaaggagagagaggaggacatCGACCTGCATGTTGGAGACATGCTGCTGGTCAGTAAAGGAGCGCTGCTCGCTCTCGGCTGCAGCAACGGAGCAGAAGAGCGTCCTTCGGAGATCGGCTGGCTGCCGGGCTTCAACGAGACCACACAGGAGAAAGGTGACTTTCCAGGGACGTACGTGGAGTTTATTGGCAGAAAGAGGATGTCCCCGCCCACCCCGAAGCCCCGCCCACCCAGGCCGCCGTCCGCAGCGTCTGTGAGGACCGACTCCGAGTCAGAAGGCTTCATGTTGCCAGACCTCCCTGAGCAGTTTGGACCCCCGGacacagcccctcccctcctcaGCAGACTGATGGAGGCCATAGAGCCcaaagGTCTGGACAGTCTCAGTGTGTATCGCAATCTGAGTGGAGGAGGTCTGGACACCCGGCAGCTGGCCGACACAGACCTGGAGCAGCTGGAGGTGTCGTCCCTGTGTGACGGGGTGTTCCGGTTCCTGCAGGATCTGCCCGGTCCTGTCCTCCCCTCCGCGCTGCAGGCCGACATGATTCATGCAGTGCAAGAGGTCCGGGACCTAGAGGACTGTGCTCAGGTGCTGCGGGGGGTGGCCAGCTCACCGACCTGCCCGGCCCAGTACGGCCTGACCCTGCTCAGTGTGGTCCGACACCTGGCCAGGCTCTGTATGCACAGCGCCAGGAACCAGCTGAGCCCCCGAAACCTGGCGGAGAGCTTCAGCCCACTGCTGTTCAGACAGGCTGCAGGGTCTGACTCCAGTCTGGATCCTCTGGTTCAGGTCCTGGAGGTTCTGATAACCAGCGAGCTCAACATGAACCAGGCTgcaccagCGCTGCCTCCTAAACCGGTGAAGTCTTCAACTCCAGCACCTTCCTGTAGTTTCAACAACAGTATTTCTCTGCAGGATGCTGAGTGGTACTGGGGAGACATCTCCAGagaGGAGGTTAATGAGAAGCTGAGAGACACAGCTGACGGTACATTCCTGGTTCGAGACGCCTCCACTAAGATGCACGGAGATTACACTCTGACTTTGAGGAAAGGAGGCAACAACAAACTGATAAAGATCTTCCACCGGGAGGGAAAGTACGGCTTCTCAGACCCTTTGACGTTCAGCTCAGTGGTGGAGCTGATCAACCATTACCGCCACGAGTCCCTCGCCCAGTACAACCCCAAACTGGACGTCAAGCTGCTCTACCCGGTCTCCAAACACCAGCAGgaCCAGGTGGTGAAGGAGGACAGTATTGAAGCTGTGGGGAAGAAGCTCCACGAGTATCACCTGCAGTACCAGGAGAAGAACCGAGAGTACGACAGACTGTATGAGGAGTACACCAGAACCTCGCAGGAGATCCAGATGAAGAGGACGGCCATCGAGGCGTTCAACGAGACCATAAAGATCTTCGAGGAGCAGTGTCAGACTCAGGAGCGCTTCAGCAAAGAGTACATCGAGAAGTTTCGCCGAGAGGGCAACGACAAGGAGATTCAGAGGATCATGGAGAACTACGACAAGCTGAAGTCTCGGATCAGTGAGATCGTGGACAGTAAGCGTCACCTGGAGGTGGACCTGAAGAAACAGGCCGCAGACTACAGAGAGATCGACAAGAAGATGAACAGCATCAAACCAGACCTGATCCAGCTCCGCAAGACCAGGGACCAGTACCTCATGTGGTTGACTCAGAAAGGAGTTCGTCAGAGGAAACTCAACGAGTGGCTCGGCCTGAAGAACGAAACCACGGAGGATGAGTACAGCATggtggaggatgaagaggacCTTCCTCATCACGACGAGCGTCTGTGGCGTCTTGGAAACATCAACCGCATTCAGGCCGAGTCTTTGCTCCGCGGAAAGAGAGACGGGACCTTCCTGGTCCGAGACAGCAGCAAGCCGGGCTGCTACGCCTGCTCCGTGGTTGTGGACGGAGAGGTGAAACACTGCGTCATCAACAAGACCGGCACCGGTTTTGGTTTTGCGGAGCCCTACAACCTGTACGGCTCTCTGAAGGAGCTGGTGCTGCACTACCAGCACACCTCACTGGTCCAACACAACGACTCGCTCAACGTCACGCTGGCCTTCCCCGTCTACAGCCAGCAGAGACGGTGACCCGCCCGGCCCCTACCGCCATCCTCGACCAGCTGCAGAACCACAACCTGACCACGTCACACATTTTAACGTTCAAAACTTTGCGGGATAACTCAGCACAACAGCGACACCCTCGACGCAAAGAGGTCGAGAAGTCTGTTCAAGTTTTTATAAAGCGTCCTGGTGCTGCAGATCTCAGTGTGTACAGTTCAGTACACATGGTTGGTTACATCCTGTAGGAGTGGTGACAGTTAAAAACTAATATTTTACTGTGAAACATGGAGCTTTAACTTcctgtgagggggggggggaaacaagCAGCTCCACCCAATTCTCAGTAAAGAtacagagttaaaaaaaaaaagactaaaaataGTTCCGTTATTGAGCTGATTCGGTGCCGAAGATCAACATTTATCGCAATTTCCTCCCATCAGAGACCGAGAACACACTTGAGGTCGGGATCACATGGGAACCTTTTTAGTTTTCTGAGATTTAAGCATGGCTACAGCAGAAAGAGTCGAGGGTTCAGAGTTTCCCTTAAAGACAATTAGAAAGACGTTCCTCCTTTTTAAGTTTATTGCAGCACACGTcacgtacagtatatataaaattaaacatttggCAATGATTACCAAATGATTTGTAAACCTCTAAGAAATCGCGTGTAAACCCACAGTAAACCTTATTTGGATGGATATAACGGAagttgcaactaatgattataaTACCTTGTCAGTggttaataaatactttgtaaagCATCTATTGTTATTTAGCTATTCTcactgcacaaaaaaaacaatcatctCTTTCATAGATCACCATAAAAGATTTCATGGGGCCAAATTAATGTTCCTTGATGATTTATAAACCACTTATTAATCATTAACTAATTATTAAAAGCATTAGACGAGCAATTTTATATTATCCATCAAAATGTTAATAGATGGTTTTACGAAACATTGAGTGTTAACTACATTCATTAACTAATTCTATATTTCACAAAACTCATGATACATTAACATAAATGATAACAttactaataattagtaaacattaacagtaaaataaccaTTAACCAATCAATGATGGTTAATATGAAGTGTTAACGAAGTGAAAAAGTAAGGTGAAAAGCGCTCAAAAACAACGCTTTtcaggttttaaaaaataatggttCGACAAGTTGTGCAGTTTTCTACCGATGCTTTCAGGCACGTTGAGATTAATTGACCTTATGAACAGCAACGCTTCAGGCTCGTTCTGAGACGCGTTCCATGTGATCACGACCTCACTGGGAGTCGATGCTGCGACTGGCGCTTCCCAGTTTACTTTCCGTTTCCTGTCCGAGGAGAAGCGAGGTGCTGAAATGTCACACGTTTTGTCTTGTGGAGGTCAGAGCTGGACTGACGGACTCCTCCTTTAAATCTCAACTGCTGATCCAGCAACAGAACACAACTAtggcatgatgatgatgatgatgatgatgttgatgatgtcaAAGACAAAATGGCGGACAATCCAGAGAGGCTTCTCTTGCATAAACACTGTGAGTGACTCTGAACGAGGTTTAAAATGAGGGCGAAGCATTTTTATATATCAGGAGAGAAATAAACTAGAAACCTTCATCATCCAAAGACCGACCCCCGAAAACACCTTCCCTCTAATCCCCACCCCGAAAAAAATCCCAGCAGTGTTTTCCAAGGTCCAGTTTCTTCAGGTTTTTTTGGTTGCCGCTATAGAGTGTCGTTTAATTTTGCAGAGCTGAGGAATGATTCTTCAACTCTttcatttaactttaattaacCGTCTGGCAGCACAGAGATTTACTCCTGCTGGATCAAAACTGTTAACAAATTCAGGAATGACGAGAACTGGATCTCTCTGGATCTACTCCTCTAAAGTCTCAAGGACTCGTGGGACAAAAACGCAGCCTGTAAACCTTTGTGTCGACACTCAGTTGATCACATATCACAATTTTCATCTTTAtggattacattttttgttccttttttttttgtgcatttggACACAGTTTCCTTTAAACCAGGTACATGAGATGAAACGGTCTGCAAGGATTCTGAAAGTATTAcatctgttgtcatggtaaccaccTGGTAACTTTTTTGAAGTTTGAAGCTTTTTTCTTTCCACACATTGGATCGGTTTTGGAAATCAATACATATTTCAAAATAGTTTGGAAATGTCCTGGATTTTTCATTTACTTATTCCACAAAAGTCCTGGTTTTTAATTCTGACATTAAAACTAGTGAACACAAACCAGAATCTGTAACATCATGAGACATTAAGAAGTTGTGAAAACTGATGAATAAAACTTTTGGTTTGATTGTC

Function

GO:

id name namespace
GO:0043551 regulation of phosphatidylinositol 3-kinase activity biological_process
GO:0007165 signal transduction biological_process
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0035014 phosphatidylinositol 3-kinase regulator activity molecular_function

KEGG:

id description
K02649 PIK3R1_2_3; phosphoinositide-3-kinase regulatory subunit alpha/beta/delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82761 lncRNA upstream 59739 15374777 ~ 15376002 (+) True G61782
TU82736 lncRNA upstream 83116 15249744 ~ 15352625 (+) False spinb
TU82749 lncRNA upstream 121163 15306447 ~ 15314578 (+) True G61770
TU82733 lncRNA upstream 194299 15240416 ~ 15241442 (+) True G61757
TU82730 lncRNA upstream 210772 15224547 ~ 15224969 (+) True G61754
TU82867 lncRNA downstream 64700 15532108 ~ 15532796 (+) False LOC120560526
TU82871 lncRNA downstream 65459 15532867 ~ 15572973 (+) True G61867
XR_005639523.1 lncRNA downstream 71947 15539355 ~ 15539844 (+) True LOC120560847
XR_005639524.1 lncRNA downstream 73461 15540869 ~ 15545477 (+) True LOC120560848
TU82947 lncRNA downstream 290182 15757590 ~ 15777141 (+) False mctp1a
XM_039803724.1 mRNA upstream 806 15431708 ~ 15434935 (+) True zgc:101664
XM_039803723.1 mRNA upstream 5159 15416456 ~ 15430582 (+) True LOC120560841
XM_039803706.1 mRNA upstream 129641 15298400 ~ 15306100 (+) False mak16
XM_039803708.1 mRNA upstream 129641 15299235 ~ 15306100 (+) True mak16
XM_039803705.1 mRNA upstream 139514 15281965 ~ 15296227 (+) True spinb
XM_039803140.1 mRNA downstream 41514 15508922 ~ 15520405 (+) True LOC120560525
XM_039803141.1 mRNA downstream 51372 15518780 ~ 15532628 (+) True LOC120560526
XM_039803730.1 mRNA downstream 91096 15558504 ~ 15562994 (+) True LOC120560850
XM_039804631.1 mRNA downstream 137558 15604966 ~ 15612582 (+) True LOC120561471
XM_039802831.1 mRNA downstream 169390 15636798 ~ 15775516 (+) False mctp1a
XR_005639522.1 other upstream 1298 15431708 ~ 15434443 (+) False zgc:101664
XR_005639607.1 other upstream 137098 15298542 ~ 15298643 (+) True LOC120561495
TU82454 other upstream 352293 15078874 ~ 15083448 (+) True G61535
TU82426 other upstream 485120 14939393 ~ 14950621 (+) False cntrl
TU82399 other upstream 641139 14786011 ~ 14794602 (+) False G61514
unassigned_transcript_259 other downstream 150477 15617885 ~ 15617956 (+) True trnac-gca_19
unassigned_transcript_260 other downstream 151336 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_261 other downstream 151665 15619073 ~ 15619144 (+) True trnac-gca_21
TU82943 other downstream 295706 15763114 ~ 15777141 (+) True mctp1a
XR_005639530.1 other downstream 1000915 16468323 ~ 16475897 (+) False LOC120560890

Expression Profile