RNA id: XM_039803733.1


Basic Information

Item Value
RNA id XM_039803733.1
length 5465
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC120560853
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15591345 ~ 15602271 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGATTGTCCGCCCCGTGCTCTCGCGGTTTTACCTTGGAGGATTCTATGAGGAACTTTCAGGGAAATTAAATTATTGTTCAAAAGCCAAAATGACACAAGGGGGGAGGATTAGTCATAGAAATGTATCCAATGCTGCTGAGGAGGCTGATATCTTATTAGACAAAGCATGACTAgatgagaggacagaggagacatGGAGGGAACTGCACcaggtTCTCAGGTTAAAGTTAGTTTCCAGTTGAATTGGTCTCTAATGTTTCCAGTGAAGTGACATCATGGCGACTGCACCACCAGTGTCTGAGCTGAGGGTTGTTCTGCTGGGGAACAGCTGGTCTGAGAGGAGTTCAGTCGGGAACTTCATAGTGGGAGAGACTGTGTTCAACACTGAGGAAGAACCAGTCTTTCTGAAAGTCAGCATACAAattgaagagaaaaaaatagttGTCATTAACACTCCAGATCTGCTGCTCCCAAACATCTCTGAAGACAAACTAAGAAAACATGTAGAAAACTGTGTTAAACACTCTGATCCTGGCCCTCATGTGTTCCTGCTGGTTCTACAGCCTGAAGACTTCACTGAGAAACACAAACTGAGACTCTGCAGAGTCCTGAAACTCTTCAGTGATCGGTCATTTGATCATTCATTGGTGCGGATATTACCACCCAGAGAGGAGAGTTCAGGTTTCATGTCAAAATATGCACAAAACCTACCCTTAAAAGACATGATCAGCAAATGTAGATACAGATACATGAGGCAGAAGAGCCTTGAACTTTCAGAGCTGTTGACATACTTGGATCAAATTATAAGTAACAATGGAGGACATTTGAGGTGTGATTCACCTTTGCATGGTGATCATCGGAATCTGAAAAAACAGGAAACGTCCATTGCTGACTTAGACTCTGTAAAACCTCCTGGGTGGAAATCTTTGGTGGAAACTGTAAACAGCTgGTTCACAccaaacacatcacacaaccCATCAGCAGTGGAAAGCACAATGAACCAAACATGTGGACTCAGGATTGTGATGTTGGGGAAAAGTGAAGATTCAAAGACAACACTCGGCAACTTCATCCTTGGTAGCCAAGACTTTGATTTCCAGACACATACCCCACTTAAACATGGTGTGGCCATCTGTGGAGAGTGGAATGGACATTTTCTAACAGTAGTGAAAACTCCAGACATCTTCAGTCTGCATGTGGAAGCAGTCAGAGAAGAGATGAAAAGGACCATCAGTCTCTGCCTCCCTGGACCAAATGTCCTGCTGCTGTTAGTAAATCCTTCTGAGTTCACTGAGgagaacagacaaacactggAGTTCATCCCGAGTATGTTTGGTCAAGATGCCTTTCGACACTCAATGGTCGTTACCACACATGAGGGGAATGAAACTAGTTTCACTGTGAATCAGCTCCTTAAAGGATGTGGCGACAGACACTGCAGCATGTTAACAATTGAGCGCACACTGTTGATGGAGAAGATTGAGAGCATCGTGCATGAAAACAAAGGGACCTTCCTCACCTTCACTGAAGAGACCATCAGATCAACATCTGGACACATCAGACCAGCTTTAAACCTGGTTCTGTGTGGGAGGAGAGGAGCAGAGAAGACTTCAGCAGCCAAGGCCATTTTAGGACAGACAGAGCTTCATCCAGTCTCCAACCCATCAGAGTGTGTTAAACATCAGGGAGAGGTGTGTGGACGTCGGGTGTCCCTGGTGGAGCTGCCTGCCTTGTATAGACAACGTCAGGAGGCAGTGATGGAGGAATCATTCAGGTGTATCTCCCTCTGTGATCCTGAGGGCGTCCATGCCTTCATCCTGGTCCTACCTGTGGGTCCCCTCACTGATGAAGACAAGGGAGAGTTAGAGACCATCCAGAACACTTTCAGCTCTCGAGTCAATGACTTCACCATGATTCTGTTCACTGTGGAGTCAGATCCTACAGCTCCAGATGTTTTTCCAAGGGAAAACAAGGACATCCAGGAGCTCCGTCAGTGCTATGGAAGAAGATGTGTTGTTCTCAACATCAAGGACCAGCAGCAGATTGCAGAGATGTTGGATGGTGTGGACATACCATATGGCTATACAACAGAAACATTTGCACATGCCCAAATAGAAAAAGTCATACAACAAGAGAAACGTATCAACATGCAACACACTGAACTTCAGACGCTGAAAAAGAGCAACATCACATGTGATGATGAGAAGCAGAGGCCAGAGTGTCTCAGGATTGTGCTGATAGGGAAGACCGGCAGTGGAAAGAGCTCTACAGGTAACACCATTCTAGGAAGAGATGAGTTCAAAGCTGAAACAAGCCAAACATCAGTCACCAAACGTTGTCAGAAAGCAGAGACCGTAGTGAACGGTCGTCCTGTCGCTGTGGTCGACACTCCTGGTCTGTTCGACACAACTTTGTCCCATGAAGAGGTTGATGAGGAGATGGTGAAATGCATCAGTCTTCTGGCTCCAGGACCTCATGTCTTCCTGGTGGTGTTAGGAATTGGCAGATTTACATCAGAGGAAAAGGAGACATTGCAACGTATCGAGAAAGGCTTTGGCAAGAATGCTAAAACGTTCACCATCATTCTTTTAACTGGAGGAGATTCACTGGAACATGACAAAGTGTCCATTGATGAGTACATTGCAAAAGGATGTGATTCCTTTGAGAAACTGATTGCTGACTGTGGAGGAAGATACCATGTGTTCAATAACTATGATGAACAAAACCGGACACAAGTCAGTGAGCTGATAACCAAGATTGACACCATGGTGAAGGAAAATGGAGGCAGCTGCTACAGCAATGAGATGCTGCAAGAGGCCGAGGCAGCAATACAGAAAGAAGTGGAGAAGATCCTGAAGGAGAAGGAAGAagagatgcagagagagagggaggaactgggaagaaaatatgaagaagaaatggaagcaatgaaaaaaagaatggaagaacagagagcagaaattGAACAGGAGAGAAAACTGAGAGAAAAACAACATGAGGAATACATCAACAAGGAGcttgaagaaagaaagaaagaacaaggAAGGATAGATGAAGAAGACCAGGTGAAGAAAATACAGGAAGGATTACAGCGACAGGACTGGAAAAGAAAACTTGAAGTtatggaggaaaacataaaacaaGAATTCAAATCAAAGCAAACCATTGACAGAAAGTTGGGGCAGAAAACAGAAGAGATGAAGGAAAAACAAGAGGCTTGGGAAAAGGAATGGAAAGAGTGGTGGGAGAAAAGAGATCAGGAATATAAGCAGAGGCAACAGGAAGAACATGCAATAATCgagcaggaaaaagaaaaatatgaaaacaacagaaaagaaGAGGATAGGATCAGACGAGAACAGGAGGAAAAAGAGCGAAAGGAATTGCAGGAAAACTACGAGAATAGGCTGGTGCATTTAAAGGAGGAATATGAAGAAGAAGCCAGAAAGAAAGCGGAGGAATTCAATAAATTCGGAGAGAAATGCATGAAGGAGTTGAAAGAGCGCGAGGAACAAATGAAAGCCAAAGATGAAGAATATGACATCTTACAGGCCCTTTCAGCTCAGAGTAAGgaacaaatgaagaaaaaacatcaAGGAGAAATCAATAACTTAGTGAGGTGTTTcaccaaaaaaagagaaaatgttaaaagaatCCGTGACTTGCTgaaaaaacaagaacaagaaaTGAGGGAGGGGGGAAATCTGGAGATTATGGAAAACCTGCAGAAAACACATGAAAACCAAATAAGTGACTTGATACAGGAACTTTTGAAAGGAATAGATGAACCACATCGGTGTCCCATCTTATaaggcattttattttgtagccaTGCTAGTGGCTTGGCTCTAGGGATGGGATCTGTCCATCTTCCATCTgtccagactgaaacaactcaatAACTTTTGGGTAGATTGCCAAtaaatgttgacattttgaTTTCACACATGACACTAACAGCAGTCTGTTTGTATAACCAATCCATCCACCCCGGACTTCTGGTTAGAATAGAATTTGTGAATgtcaaaaacaaatataatcCAACATGTAATTGAGAATGCAACTTAGCTGTATGGGGATGTAACATTTATCTACAGCACCATCATCAGCTCACCATTTGAATGTGTCCAATACTTTTGGTTTGTGAACACAGCCTATTTTCTCCTTTAGTCAGTGAACTATGGTATAATGTGGGATATCAGACTCCAAGGTGTCTCAATATATGAACATAATTGGACGATGGAGGTAAAGGTTTGCTTCCTTGATTATTTATcagaacgttttttttttttgtttttgttttttagatttACTCAATATCTTCATATAAAGCTTGTCAAGTCAATATGCAAACTGGCTGTAAATATATAATTcagtttacaatgttctagGATAGAGAACATTAAACAGGCACATGAGTGAGAGTGGGCACAGACTAGGCACTGGTTAAAAACGTGCAGCAAATGTGCAGTAATGATGGAAATAATGCTTACAATAAACTGTTTTCATTAATCACTCTCCAATAAGAATATATGTTTGAATTGGCATCAAACATTAACGTTCAAAAGCAGAAAACCTGGTGAATCAGTCCTataacttaacccttgtgttgtcttccatagaccatgaacttgttgtcctccaACAAAATTAACTCCCGGTCTGTTTTGCCTttttataaagcataaagtataGTATCACCCAATTCTATTGTACACCTTCTAGTCATCTAAAAAGATGAATAAAGATTACCAATAGTTTTACACTTTTatttatggtcaataaaccaCATTTACCGTacatgaaattatacctaattttggaGTACAATaggcagaaattatgaattattttcactatattgAAGATCAGATGAGATATGTCAATGTTTGGTCAGGAAACTGTTTTGaaactattttattattttgaatggcagaacatatttctgataaagaaactttgaaaacgggtcaaatttgacccgaagataACACAAGGTTGATATGAGTAATTATTGCAGTATGTGTTGTCCACAGCAGCTGTTACTGTATGAAAAACTGTTTGAGTTCATTGAATCCCTGCAGCCATCTGATGGCAGCATGACGTGTATGTATAAaaccataaaaataaaatggttaTACATCTACAGCCTCTTCAGAACTCGGTAGTTTGGATCTTTTGAAGTGGGTTTATGAGgtacttctccatagtcagtagatggcggtcggcgTGCCCCTAGTTTGGAGAAGCCAACAGGAGTAATGATGTGTTGTCTTCTTCTGCAATTTTTTGTTGGGAGTAATAACCTATTCTGCGATTTTCCAAATTGTTTGTGTAGCCTACTTAtttatagattttattttaacagttcAGTATAAAAATACTTCAACAGCTGGGAGCTATGCTTGATCATTAGAACGACTCTttcatttttaaagcagatatattgtacatattttatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639525.1 lncRNA downstream 46994 15541832 ~ 15544351 (-) True LOC120560849
TU82900 lncRNA downstream 128424 15458833 ~ 15462921 (-) True G61894
TU82830 lncRNA downstream 163850 15425551 ~ 15427495 (-) True G61837
TU82801 lncRNA downstream 285278 15303729 ~ 15306067 (-) True G61813
TU82799 lncRNA downstream 337440 15252693 ~ 15253905 (-) False mfsd14bb
TU82980 lncRNA upstream 171408 15773679 ~ 15777138 (-) True G61956
TU83024 lncRNA upstream 335705 15937976 ~ 15939248 (-) True G61993
TU83027 lncRNA upstream 380605 15982876 ~ 15983411 (-) True G61996
TU83032 lncRNA upstream 494150 16096421 ~ 16100383 (-) True G61998
TU83037 lncRNA upstream 514956 16117227 ~ 16141681 (-) True G62001
XM_039803732.1 mRNA downstream 909 15581292 ~ 15590436 (-) True LOC120560852
XM_039803731.1 mRNA downstream 14091 15569699 ~ 15577254 (-) True LOC120560851
XM_039803729.1 mRNA downstream 76444 15504374 ~ 15514901 (-) True LOC120560846
XM_039803727.1 mRNA downstream 88901 15472070 ~ 15502444 (-) True LOC120560845
XM_039803722.1 mRNA downstream 175886 15409196 ~ 15415459 (-) True srp19
XM_039803839.1 mRNA upstream 13521 15615792 ~ 15622228 (-) False LOC120560939
XM_039803838.1 mRNA upstream 13521 15615792 ~ 15622228 (-) True LOC120560939
XM_039803979.1 mRNA upstream 20658 15622929 ~ 15634506 (-) True fam81b
XM_039803978.1 mRNA upstream 20658 15622929 ~ 15634178 (-) False fam81b
XM_039802841.1 mRNA upstream 174972 15777243 ~ 15811159 (-) False slf1
XR_005639521.1 other downstream 189021 15369827 ~ 15402324 (-) False LOC120560838
XR_005639520.1 other downstream 189021 15369827 ~ 15402324 (-) False LOC120560838
TU82789 other downstream 358656 15225095 ~ 15232689 (-) False LOC120560831
TU82785 other downstream 372936 15216550 ~ 15218409 (-) False sdhaf1
TU82671 other downstream 549981 15036979 ~ 15041364 (-) False tti2
TU83104 other upstream 902355 16504626 ~ 16505067 (-) True G62064
TU83119 other upstream 946351 16548622 ~ 16550256 (-) False LOC120561322
TU83120 other upstream 946351 16548622 ~ 16551175 (-) False LOC120561322
TU83121 other upstream 946351 16548622 ~ 16550256 (-) False LOC120561322
TU83278 other upstream 1521725 17123996 ~ 17124477 (-) True G62194

Expression Profile