RNA id: XM_039803746.1


Basic Information

Item Value
RNA id XM_039803746.1
length 1632
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC120560868
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8331385 ~ 8402569 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCGCTCCAGTGTTGGTATTTGGCCGAAGAGACTCCGAGACAGACGCAGCGCTACAGGACATCAGGTATACTGTCTGAGATGAAGCTGAACGTGTTGTTGGGGGTCGGGGCTCTGCTTGCCGTCTTCCTCCCTCGCTCTGCTGACTGTCGCCCCGCCGATGCAGATGCCGCTGTTGCCACGCCAACAGGCCTACACCTCCCCCGGCCGCTGCTGCTCCCGCGGCCGCTGCTGCTCCACCTCGGGGAGGAGTTCTCCCTCCGGCTGGGGGGAGGCTCTGctgcctcctctccctctccctcttcctcttcctcttcctcttcctcagcgGTGAACGTGGCGCTGCTGCGGCTGACGCAGCGCCTCCTGCAGGCGCGCGCCGAGcagcaggaagaggagaaggagaagcgGTCCGAGGAGTCTCCCATCTCTCTGGACCTGACCTTCCACCTGCTGAGAGAAGTTCTGCAGATGGCGCTCGCTGAGCAGCAGGCGCTGCAGGCCGACAGCAACCGCAGGATGATGGACACGGCCGGGAAATGATCCAGGACGCTCTGCACCTCCTGTCCCTCGCCGTAACCAGAGCCCATCTACGGAGAGCCATTTCACTTCCCattaagccccattgtaccgaatttggttgcagttcccccatagttccactgggggtgattgCAGGCGagtgctaaatgaatgggagtctatggagctagtcggctaaatttgtctctttcgcctgattgtcgttgagaaatctcagatttgattgtagtttttgcaagttcaacatggattataggtcgaaagttgaatgaaccagtacttatgtcctttgaATTGCTTACAGGTTGAgttgttgttgcccataacacgctagcattctgctaatgaatgctgattggtcagtgaaggactgattacgaccaGAGGTCCTGCTTGATGGCATCCACATTCTCTGAAGTGACTCAGAGCCGTAAAGCAGTATATCTGGCCGtacatatgtgtatgacgtcattgacattttaaaaaggctttttagaacaaacaaaaaaaacacttcttctacaaatctaacacccagcagtgtgtattttctcagcctcccctttcgaatgcaacattaaaattactagacaaaaaattatatcctgagaaaagtggactTTGAGGGCTATAACGctatagagtcccattcattctgcactggcccgTGAGCTCCATAGACcttcattcattctgcactggcccgTGAGCTCCATAGACcttcattcattctgcactggcccgtgagctccatagagtcccattcattctgcactggcccaTGAGCTCCATAGAccaccattcattctgcactggcccgTGATCTCCATAGACCACCATTCATTTTGCGCTGGCCCGTCAGCTccatagacctccattcattctgcactggccctTGAGCGCCCCCTCTAGTGGAAAgagagtggaactgcaaccagttcagaagccggaagtgtCCCGAGAGAGTGGATCCATTATTAGATATTCTCTGCCGTAACCTCGGGACTTTCTACTTCCTGTCCAgtgtttttatcattttatggTTTTCATTAAAGCTGCAACTGCTGATTATTAAACTGATGTTGCCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80713 lncRNA upstream 24930 8372266 ~ 8372551 (+) True G60120
TU80698 lncRNA upstream 70528 8325053 ~ 8326953 (+) True G60109
TU80663 lncRNA upstream 84368 8302258 ~ 8313113 (+) True G60080
TU80668 lncRNA upstream 158693 8235559 ~ 8238788 (+) True G60084
TU80667 lncRNA upstream 160954 8235559 ~ 8236527 (+) False G60084
TU80747 lncRNA downstream 15073 8417642 ~ 8417850 (+) True G60147
TU80748 lncRNA downstream 20620 8423189 ~ 8423743 (+) False LOC120560006
XR_005639402.1 lncRNA downstream 26384 8428953 ~ 8431230 (+) True LOC120560009
XR_005639401.1 lncRNA downstream 32172 8434741 ~ 8437598 (+) True LOC120560008
TU80762 lncRNA downstream 34378 8436947 ~ 8437592 (+) False LOC120560008
XM_039803745.1 mRNA upstream 8363 8387822 ~ 8389118 (+) True LOC120560867
XM_039803057.1 mRNA upstream 193295 8173021 ~ 8204186 (+) False bicdl1
XM_039803058.1 mRNA upstream 193418 8172560 ~ 8204063 (+) True bicdl1
XM_039803083.1 mRNA upstream 314107 8078302 ~ 8083374 (+) True LOC120560501
XM_039803082.1 mRNA upstream 319313 8055365 ~ 8078168 (+) True mtmr3
XM_039802097.1 mRNA downstream 21143 8423712 ~ 8427745 (+) True LOC120560006
XM_039802096.1 mRNA downstream 21143 8423712 ~ 8427745 (+) False LOC120560006
XM_039802098.1 mRNA downstream 30383 8432952 ~ 8434672 (+) False LOC120560007
XM_039803055.1 mRNA downstream 62602 8465171 ~ 8482178 (+) True LOC120560486
XM_039803061.1 mRNA downstream 407985 8810554 ~ 8836973 (+) True zgc:110329
TU80548 other upstream 362120 8028192 ~ 8035361 (+) False cux2b
XR_005639609.1 other upstream 698230 7699133 ~ 7699251 (+) True LOC120561497
XR_005639608.1 other upstream 699436 7697927 ~ 7698045 (+) True LOC120561496
XR_005639610.1 other upstream 704272 7693091 ~ 7693209 (+) True LOC120561498
XR_005639604.1 other upstream 706689 7690674 ~ 7690792 (+) True LOC120561492
XR_005639399.1 other downstream 28968 8431537 ~ 8434672 (+) False LOC120560007
XR_005639400.1 other downstream 28968 8431537 ~ 8434666 (+) True LOC120560007
unassigned_transcript_244 other downstream 41885 8444454 ~ 8444525 (+) True trnaw-cca_2
unassigned_transcript_245 other downstream 43049 8445618 ~ 8445689 (+) True trnaw-cca_3
unassigned_transcript_246 other downstream 44211 8446780 ~ 8446851 (+) True trnaw-cca_4

Expression Profile