RNA id: XM_039803756.1


Basic Information

Item Value
RNA id XM_039803756.1
length 3568
RNA type mRNA
GC content 0.53
exon number 15
gene id LOC120560874
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 43832397 ~ 43868090 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaggaagagagaagagaagaagaggaacaCGCAGAAgacaagacagagaaagagaagaagagaagaagttttattcaatttaatcaGCTGATCAATAATCACGTGAAGACGGACGGAAACACCacagacagATCGGTCGAGGGACGGAGCCTCTTCAGGTGTTTACATTATCACCATGACAACCACCTGTCTGAGCTGAACCTGTGGGATGTGAGGTGCAGAGGAACTTCCTGTCTGACATCACCATGCCccccctcctgctgctgctgttgccgGCGCTGGCTTGCTGTCAGAGCGCCGGTCCGTTCGACGAGTGTCGGTCTCTGCGCGGCTCGGAGGCCGGGCCGGGCTGGGAGTTCTTCCCCTGCCAGCCCCCCCCCGCCAACATGAAGGAAGTCATGCAGATCAGAGTCGACCCGCCAGGGATTACCTGCGGAAACCCACCGGAGAGGTTCTGCACACTGGAGAACCCGTACCTGTGCAGCGATGAGTGTGACGCATCCAGCCCTGACCTGTCTCACCCTCCTCAGCTGatgggagacagggagaggggggggctcATCACCTACTGGCAGACGGTCACATGGTCCAGGTATCCTGAGCCCCTATTGGCCAACATCACGCTGTCCTGGAACAAGAGTCTGGAGGTGGTCGATGACATCGTCGTCACCTTCGAGTATGGCCGGCCAACCAGCATGGTGCTGGAGAAATCTATGGACAAAggTGTAACATGGCAGCCGTATCAGTACTACGCTGATGATTGTCTGGAGGCGTTCGGTATGTCTCCTAAACAGGTCTCTGATTTAGCACCGAGCAACTTAACCCGGGTCATCTGCACTGAGCAGTACTCGCGCTGGGTCGGAGCCAAGGAGGAGAAGATCGTGGTGTTCGAGGTGCGCGCTCGGTTCGGGGTGTTTGCAGGTCCAAAGCTGATCAACATGCACGCGCTGTACACCCGGATGGAGACCATGAAGGGTCTGAGAGACTTCTTTACCTTCACCAACCTCCGCCTGAGACTCCTCCGCCCAGCGCTGGGAGGGACATACGTCCAGAGAGACAACCTGCTGAAATACTTCTACGCTGTTTCAAACATCGATGTTCCTGCCAGGTGTAAGTGTAACCAGCatgcatctcagtgtgtgttacGGGATGCGACGCTGCAGTGTGAATGCGACCACAACACAAGTGGACAGGACTGTCAGCGCTGCAGACAAGGGTTCAAATCCCGCAGCTGGAGACCGGGATCATACCTGCCGCTGCCCAGAGGCTCCGCCAACACCTGTGAGGCAGCAGAAACAGCAGACAAATTTAGCAGTTCAGCAGAACCAAAAGCGGATACATTTCCATCCAGAAGTCCAGCTCCAGAGACAGGAGACACTCTGTACAAACCAGTTTCCACAATCCCAGACACCACCACTCCCAGTACCACTGTTACCACCTCCAGTTACACCAGTGCCAACAGCCCCACTGTCCCAGACTGCAGCACTGACTCTGAAGTGTCTATTTCTGACCCAGTGACTCCGCCCCCTGACTCCACCACCTCACCAGACAACACAGACTCCACCCTCTCTTGGACTGGTACTATCTTACCTTCTGATGGGCCAACAACATCAACCGGGGCTCCAACAACAACAGTCCTCCCAGAAATAACCCTGGCCAGTGACAGGGCATTATCTGGAGATACAGACCCAACCAACCAGGCTGGAGATGCTCTACCCACAGCAGGAGCTGACACAACTTCTCCTGATGTTCTTCCAGAGACTCCGATCAGTGCACCACCTCCTGATCTACCTCCTCCAGATGGAGCCTTTCCAGATATTCCCCCTCTGGATGAACCTCCACCTGATAAAGTGGACTTTAGCTTCCCTTCTCTGGGTGACCCATCTTCAGCTGACCGTGGACCAGATTCTGGACCAGATTATGGACCAGTGCCTGTTGGTGATCCTGGGAACTTTCCAGATAATTCCCGTGAATCTGTTGATATTTCTGGATCAAATTCAGTCGACTCTGGACTGGATTCTGTCTCAGCCGGGCTGGATACAGAGGAAGCAGTAAAAGGTGGAATTGAGTCAACTCCTGAAGCAGTAGATGATCCAGGAGTAGATTCCTCTGCATCTCAGATGGAAGTAAAGTCTTCTGGAGAGGATTCAGCTGCTAGGGGACCAGCAGGAGGCTCAGAATCAGTTGCAAAGAAAGACTCTAAACAAGAGAAGACAGAAGagcaaaaagaggagaaagTCACTGAGGCCAAAGATGAAACACCAAAGGAaacaaaagaaggaaaagaaacaaaagaaggaAAGGAGAAAGATGACAAAGGCTATGAgaaaaaagCGCCCCAAAAGATTCTGATTCCAGGAGGACCAAAGGTCAGTCAGCTGTCCAAAATCGCCTACGTCTCCTTCCAGGACTGCGAGTGTAATGGTCACTCCAACCGCTGCAGCTACATCGACTTCATCAACGTGGTCACATGTGtgagctgtaaacacaacacacgAGGGCAGAACTGCCAGTTCTGTCGCCTCGGTTACTATAGAAACCCCTCGCTGCCGCTGGACGCCGAGGACGTCTGTGTCgagtgTGAGTGCAGCGCGGCTGGCAGTGTGTCTCCTCACTGCTCCGAGTCCGGTCTCTGTCAGTGTAAAGGTGGAGCCACCGGGCGGCGCTGTGACTCCTGTCTGCCTGGATACACCTGGAGAGGGGGCGGAGCCAGCTGCACAGAGAATGTGTGTGACGAGGAGAGTCTGGTCTGTCAGAACGGAGGAACCTGTGTCGACTTCCGGCGCTGCGTCTGTCCGGCAAACGCCACAGgtgtgctGTGCGAGAACAGAGTGTGTCTGAAGAAGGGCGGTTGCCAGGACGACGCTGAGAGCTCTGCCCCCTCTCTGACATCACAGCTTTACCTGCTGAGCCTCGGTCTGATCTGCTCCACCCTCCGCTGACCCCCCCCAGACCACGCCCACTGATGACGTCACACCGGGATgaggaacaggaagtgacattaCAGCTGGATACACCTGTGACGTGTTGATTTACCGTTCcaaactgaaactaaaacatATTTATAACTAATAAGCTGTGACTCAGTCAAATGTTACATTTCTCAGGATTTTAGAACCACCGTGTTCAGACATATGAAACTACACGGATAACCGTTAGCTCGCCAGgctaaagctaacgttaacacAACTTGGTGGGAAAAGGAGAAACTGTCACGTGACTCAGGCTCCATCTCCAGCACTACGTTTGGGTTTTTAAGGTTCTGAGTTCGGATCCAAAGTGATCTCCAGTAGAAGAAGTAATCTAACAGCCcaaacctcatatctcatcaTCATTCTGGTATACTGGACATAAACAGTTACCATGGTAACATCCTGGTATACTGGACATAAACAGTTACCATGGTAACATCCTGGTAGACTGGACATAAACAGTTACCATGGTAACATCCTGGTAGACTggacataaacaggaggcagcgtggagaCTCCTCCCCCTGCTCGTAGTTACCATAATAACGTTAGGAGcatggggaatgagaggggggaacaccagagcagggggaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93064 lncRNA downstream 27552 43801552 ~ 43804845 (-) True G69454
TU93065 lncRNA downstream 27552 43801552 ~ 43804845 (-) False G69454
TU93089 lncRNA downstream 34086 43797779 ~ 43798311 (-) True G69472
TU93079 lncRNA downstream 60852 43769340 ~ 43771545 (-) True G69463
TU93067 lncRNA downstream 77292 43743280 ~ 43755105 (-) True G69455
TU93109 lncRNA upstream 10673 43878760 ~ 43958910 (-) True G69485
XR_005639557.1 lncRNA upstream 75889 43943976 ~ 43949454 (-) True LOC120561020
XM_039804563.1 mRNA downstream 11095 43809629 ~ 43821302 (-) True endog
XM_039802457.1 mRNA downstream 123136 43665787 ~ 43709261 (-) False LOC120560198
XM_039802456.1 mRNA downstream 123136 43665787 ~ 43709261 (-) True LOC120560198
XM_039802492.1 mRNA downstream 180862 43590044 ~ 43651535 (-) True LOC120560219
XM_039802481.1 mRNA downstream 250085 43557717 ~ 43582312 (-) True fibcd1a
TU93018 other downstream 123161 43680476 ~ 43709236 (-) False LOC120560198
TU92966 other downstream 285839 43541243 ~ 43546558 (-) False phf19
TU92928 other downstream 451798 43371767 ~ 43380599 (-) True G69356
TU92812 other downstream 581102 43250758 ~ 43251295 (-) False LOC120561119
TU92775 other downstream 613503 43211019 ~ 43218894 (-) True G69249

Expression Profile