RNA id: XR_005639528.1


Basic Information

Item Value
RNA id XR_005639528.1
length 1548
RNA type transcript
GC content 0.51
exon number 9
gene id cfap157
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 34514010 ~ 34527405 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCAGTAAGAACGGTTTCTCGTCGTTTCTTTTCCAGGGATTTTCTTTGAAAAGTAGAAGATTAAGATTTAAGCGGAGATAGCGTTAAACAACCCGCAGCCAGAAAAATATACaggaaaaagacaaacacataAGTATGGCGGATGTAATCGGTTCTTGGGAGGAGAAGTCTTTATATTTGACTCAAATTCAATATCTGGAGGAGCAGTTGGagagATGTCAATTTAAATATGACGAGCTGGAGAAACAGAATAAGGACCTGGCCCCTAAGTACAGCGCGCTGGAGAAGGACAAGAAAGACACCACTGAGTCCCTGAAACGCTCCGCGGCTGTAAAACAGAAGAGGGTTGAAGAGCTGACTGAGCAGCTGAAGACTCAGCAGCAGACGGACCAACAGGACAGAGAGGAACTGCAGCTGCAGCACAGCCAGCAGAAGAAGGAGCTGCAGGACCGGATCAACGGACTTTACTCAGTAAGCAGGACGATGGTGAAAAAGTttgaggagcagcaggagctgGAGGAGCAGCTGAAGCAGCTGATGCAGGAACAGTCCAACATAGAGTCTATGAAGAAGCAGCTGTTGGATCAGAGAGAAGAGCACACAGCTGCCATCGACAGCCTGATGAATGAACTAGAGTTGGAGAGGGAAAAGGTGATCGTGGAGGGGCAGCAGGCTGTGGACCGATGCGTTGAGAAGAAGGCCTCAAAGATTCTCCGCAAGGAGAGAGCTCTTCACAGCGAGCGGCTGCAGCAGCTCCAGGTCCTGCTGAACGAAAACTTGGTCCTGCCAAAGGAGAAAGACGTCTTGCAAGACAAAAAGAGGGTTCTTTGCTTTGAGAGAGAGCAAATGAAGAAAGCGCTCATAAAGATTACCCAGGAGAGTATCAGCTACAAAGATGAGATAAAGCAGCTGAAGGAGAAGTGCCAGAAGCTGAGGGTGGACCTAAAGGACCGTGATGCCGCCTGCAAGAGCATGCTGACCAAGAAAGAGGATCTCTGTAAGCGCCTGGATTCAGTGGACAAGGACAGACGACAAAAAACGTCCGAGGCAGATCAGCTGAAGGTGGAGCTccagagggagaagagcagGAGGAGGCAGATAAAGAACGTCATTCAGGAAGCAGGCATCACTCTCAGCCACATCCTGACGGAGTTAGACAAGCCGTCCGAGACTGAGTGGAAGATCCTGAGGCTGCTGGAGATCCTGGAGAGCACCGCCCCCCCCAGCGACCAGGCTCCGCCCTCGACAACTCACATGAGAAGAGCAGTTGAGGGCCAAAACCGCAGACCACTGACCCCAAACCAGCCAGGAAACTCTGCAGTCAGAAGACCCCCAGCTCTGTCGTGTGCTCCTCAGCAGGCTGATCCAGAAGCCGGAGCCTCTGCAGATTGCTGAACCGAATCCAGCCCACAGTAGGGAAGATCAATGTTGTTCATCCCACCgccccatttcagaataaagTGTTTACAAAATGTTGGCCCAGGCCGAGGCCAAAGGTGAGACTGCTCAACCACGACGGCCTGCTTACTTTGAACTGTCGCCACCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89323 lncRNA upstream 4397 34508142 ~ 34509613 (+) True G66769
TU89226 lncRNA upstream 27259 34486538 ~ 34486751 (+) True G66695
TU89223 lncRNA upstream 57261 34456490 ~ 34456749 (+) True G66692
TU89217 lncRNA upstream 74082 34430942 ~ 34439928 (+) True G66689
TU89177 lncRNA upstream 232081 34187830 ~ 34281929 (+) True G66652
TU89399 lncRNA downstream 288184 34815589 ~ 34816327 (+) True G66830
TU89406 lncRNA downstream 301487 34828892 ~ 34829654 (+) True G66834
TU89403 lncRNA downstream 334094 34861499 ~ 34864690 (+) True G66832
TU89494 lncRNA downstream 472873 35000278 ~ 35002196 (+) True G66907
XR_005639572.1 lncRNA downstream 728256 35255661 ~ 35258072 (+) True LOC120561203
XM_039804146.1 mRNA upstream 75503 34427821 ~ 34438507 (+) True smarcb1a
XM_039802754.1 mRNA upstream 92516 34351711 ~ 34421494 (+) True si:ch211-251j10.3
XM_039802753.1 mRNA upstream 92516 34364482 ~ 34421494 (+) False si:ch211-251j10.3
XM_039802752.1 mRNA upstream 92516 34372954 ~ 34421494 (+) False si:ch211-251j10.3
XM_039802755.1 mRNA upstream 92516 34382190 ~ 34421494 (+) False si:ch211-251j10.3
XM_039803765.1 mRNA downstream 4 34527409 ~ 34535705 (+) True gstt1a
XM_039803766.1 mRNA downstream 23713 34551118 ~ 34563151 (+) True p2rx7
XM_039802646.1 mRNA downstream 60728 34588133 ~ 34592716 (+) True LOC120560310
XM_039804034.1 mRNA downstream 238525 34765930 ~ 34773806 (+) True LOC120561070
XM_039802732.1 mRNA downstream 247344 34774749 ~ 34805947 (+) False sh2d3cb
TU89079 other upstream 737612 33775925 ~ 33776398 (+) True G66578
XR_005639474.1 other upstream 1401194 33077246 ~ 33112816 (+) False cds1
unassigned_transcript_266 other upstream 1942251 32571688 ~ 32571759 (+) True trnap-ugg
TU88651 other upstream 2144026 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 2184020 32322507 ~ 32329990 (+) True G66256
TU89395 other downstream 238541 34765946 ~ 34773700 (+) False LOC120561070
TU89401 other downstream 334094 34861499 ~ 34864266 (+) False G66832
TU89402 other downstream 334094 34861499 ~ 34864266 (+) False G66832
TU89404 other downstream 334094 34861499 ~ 34864266 (+) False G66832
TU89504 other downstream 519450 35046855 ~ 35059618 (+) False LOC120561428

Expression Profile