RNA id: XM_039803790.1


Basic Information

Item Value
RNA id XM_039803790.1
length 3406
RNA type mRNA
GC content 0.50
exon number 17
gene id anapc5
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2560749 ~ 2577050 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGTATGTAGCTAATACACCAAGAAGAAAAAGCAGAAGGAGGGCAGTTTGAAAGCAAACTTGGCAACTTCTGTCAACATGTAAATAAACCAAATTAcctgacaagaccaaagtgagcGTTCACTGTCAGTAAGATTctgttttttgcaagttagCAGAGACTAACCGTTGATGTTTTATTGCCGTCTTCTcgggactagctagctagctagctaacgttaaatacaCTTggaacgctagctagctaacgttatgttagctgctgctgctgctgctggctggtCTTTAACTTTTATTTCCGCTAAATATTGACCCAGTGTACCTCAACATTGGCTTATTTAATCGCCGTAGCCTAACACAACCTGTCAAAATGGCGAGTGTGCATGAAAGTTTGTATTTCAACCCTATGATGACGAACGGAGTGGTCCATGCTAACGTGTTTGGTATCAAAGACTGGGTGACTCCGTATAAAATCTCCGTCCTGGCGCTGCTGTACGACATGACTGCGTCCAAAATCACACTTCCAGAAAGGAGACGACTTAACAAACTCATCCTGCCCTTGCAGCAGGGTCCAGACCTGACTCTTGGCCAGTTCCTGAAGACTGTGGAGGAATGTTGCCCTCAGACTGCATATGCTGTCAAACTCCGGCTGCATGAAATGGCAGACGGAGAGCTGAAAGACATGGAGTACTTCTTTTCCACTCTTCCCACTCCATTCTCTGCTTTTGATTCAGAGGCTTATAAAACCAGTGTCGTGGgtCTTTTCATGAGACACATGCTCCTGGCCTACAACAAGCTGTCTTTCAGTCAGGTCTACAAGCTGTACAAGTCCCTGCAGCATTACTACCACAGTCACTACGCCAAGCCTACCGATGGCCAGGTGAGTTTGCCAGTGCTGGTTGCTGACGATTCCGACATGGACCTCACCAGCACAGAGGATACTGTCGGGGACAGAATAGACAGAGAGGAGTTGGACACCCCGCTGCACGAGTCAGAGCTTCGAAATGACAATACTCCGAGCAGAGGTCCCCTGTCACAAAAACAAGCGGAGTACTTTCTTGCAAGACAGGCATATCTTCTCAAGAACGACGAGAACAAAGCCCTGAAGCCGGCTGCGCTGCAGGAAGAGCTCAACAACATGCTGAAGTTCAACCCCGATTTTGCTGAGGCGCATTACCTGAACTACCTGAACAGCATGAGAGTCCAGGACATCTTCCTCTCCGCCCACAGTCTCTTGCATTATTTTGACCGCCTCATCTTGTCTGGAAGCGAGGGAAAGAGCAACGGGGACGAGGGCTACGGCCGAAGTCTCCGCTACGCTGCTCTCAACCTGGCAAGCCTGCACTGTCGCTTTGGCCACTATCAGCAGGCTGATCTGGCTCTACAGGAAGCTATCCGCATTGCCCAGGAGTCCAATGATCATGTGTGCTTACAGCACTGTCTGAGTTGGCTCTACACATTGGAACAGATGAAGGGATCTGACAGCACTGTGTTGACTGAGGACTCTGTGAAAATGGCTGCCCATTTCTGCCTGCCATACCTGGCATCTCTGGGCATTCAGTCTCtggtccagcagggggcgacacagGGTAAGACGGCCCACAAACTGATGGATGCACTGAAGGACACGGACATCCTGCACTGGAAGCACAGTCTGTCGGAGCTGATCGAGATCAGCCTGGCTCAGACTACGTCCATATGGAGGATGTTCGGCAAGAGCACCATGGCTCTGCAGCAGGCCCAGCTGCTTCTCAACATGAGCAGTCTGGAGCCAGTCAACTTCGGGGTCCAGCAGAACAACACCGAGGCGTTCTCTGTGGCTCTGTGCCACCTGGCCGAGCTGCACGCTGAGCAGGGCCTGTACTGTGCAGTTTCCGAGATTCTCCAGCATCTGAAAGAACAGTTCCCTCCTCACTCGCATCATGCCAAGCTCTGGATGCTGTGCGATCTGAAAATCCAGTTTGAGAGACATATGAACGAAGGGAAATACCATTTGGCAGAGCCACTAGTCACGGCGATCTCTGCCTTAAACAAAACAGAAGGTCTCTACAGGAAAGCTCAAGTTCTGAAGGCTCTGAACCGGAGCACTGAGGCGTACAGCATCTTACAGCGGCTGCAGGTGCACTGTGAGAAGACTAAACGTACCGAGGTGGTCATCAGAGTTATGCTTTCCACCGCTGAGCTCCACTGGGAGTCGTCTGGCTTCTCCAcagctcttcctctcctcctgcaGGCCTTGGCTCTGGCTAGACAGCACCACCTTCAGTCCCTGGCCTCAGAGACCATCCTCCACCTGGCCTTCACTCAGCTGATGTTGGGGGTTCCTGAGCACGCTCTGAGTGTTCTGCATGAAGCCATCGAGCCCGTTCTGGCCCACGGATCGCTCATGGACAAGGGCCGAGCCCTGCTGCTGACGGCCCGCTGTCAGATGGCGGTGGCTGGGTTCAGGCCAAATGGGCAAGCGCGAGCAGATTTGCATTTGGTGGTTTTGGCTGTCGACACGCTAAATGAGGCAGCAGCCTATTTCTCCAAGCTGAACTGTAAGGAGCGGCTGCGGGACGTCCACTACCTGCAGGCCCAGCTCCACCGCTCTCTGGGGCAAACCTCGCAGTGCAACAAAAGTGCCATGCTCTTCCGGCTGCTGGACCAGGAGCTGCAGTCACCAGCACCGCCGGTCTCCATGCGACTGTAACTACTCCCCTGTCCCACAACTCAACACGAAGGACACAACACCTCCTCTAACCACTAGATGGTGATGAAGATCTGTCCTGCTCCGTCAGCACTAAAGCATTTCGTTTAACATTCAGAGCAACTGTGGAACTCTTTGCACGCAATGCCTGGGTAATAATCATTAGACAGGACAATGTCAGTAGTCATAAACAAGGCTGAGTTACCAGTAGACCAAGAATAGATCAGTTGTCTCTTCACTCATGGTCAGGTAGATTTGATTGATGGCCTGATGATaaacataatgtttttttaattttttttataaatacttCAGCAACAGTCCAGGTCTGTCAGACAGACATAACATGCCTTGCGACGGCGTAGTAGAAACATGGAAGGTTTATCAGGAGCTGTCTCCGCCGTGCTGATTTAACCACCTCCTTTTGATGGACGAGGGTAATATCACAGTTAGCTACAAGATGAATGTGTTTCAGTGGCCCCGATGATTCATATTTTGCCAGAAGAATACAGATGAAGTGGGAATCCGGAGGAGAAAATCACTATCATAAGAGACCCACGATGACATAACACCAGATACTGTTGCTGTATTCCGCTAATGTCCGACATGATTTGTGACAAAGATTTTTGGCTGATAATATTACATTTCGGTGTCCTGACGGGCCTGTGATCCATTACCCGCTGCACTTCTTTCAAGAAAATAAACGACTTGCTTTTT

Function

GO: NA

KEGG:

id description
K03352 APC5, ANAPC5; anaphase-promoting complex subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78772 lncRNA upstream 30026 2530492 ~ 2530723 (+) True G58603
TU78770 lncRNA upstream 34479 2526052 ~ 2526270 (+) True G58601
TU78768 lncRNA upstream 36182 2524207 ~ 2524567 (+) True G58599
TU78767 lncRNA upstream 36815 2523641 ~ 2523934 (+) True G58598
TU78766 lncRNA upstream 37111 2523439 ~ 2523638 (+) True G58597
TU78788 lncRNA downstream 47067 2624117 ~ 2625352 (+) True G58618
TU78832 lncRNA downstream 86353 2663403 ~ 2665691 (+) True G58650
TU78833 lncRNA downstream 88768 2665818 ~ 2667041 (+) True G58651
TU78834 lncRNA downstream 90208 2667258 ~ 2667835 (+) True G58652
TU78837 lncRNA downstream 91036 2668086 ~ 2668677 (+) True G58653
XM_039802996.1 mRNA upstream 21616 2537954 ~ 2539133 (+) True LOC120560453
XM_039804521.1 mRNA upstream 125807 2365750 ~ 2434942 (+) True LOC120561412
XM_039804522.1 mRNA upstream 126702 2365750 ~ 2434047 (+) False LOC120561412
XM_039804523.1 mRNA upstream 142580 2365750 ~ 2418169 (+) False LOC120561412
XM_039803547.1 mRNA upstream 250575 2273678 ~ 2310174 (+) True dock5
XM_039804278.1 mRNA downstream 23840 2600890 ~ 2616973 (+) True lrrc75ba
XM_039804270.1 mRNA downstream 53454 2630504 ~ 2634683 (+) True asphd2
XM_039804271.1 mRNA downstream 53454 2630504 ~ 2634683 (+) False asphd2
XM_039803595.1 mRNA downstream 63102 2640152 ~ 2654597 (+) False cabp1a
XM_039803600.1 mRNA downstream 67075 2644125 ~ 2654597 (+) False cabp1a
TU78000 other upstream 2348379 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 301351 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 1540229 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 1847091 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 1855121 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 1855618 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile