RNA id: XM_039803799.1


Basic Information

Item Value
RNA id XM_039803799.1
length 5336
RNA type mRNA
GC content 0.48
exon number 20
gene id ercc6l2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 23704402 ~ 23722529 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAGTGGAGCTGCGGTTGgtcctgctgtgtgtctgtgtaccttTTGGGAAGATACATGAACTTAAACGGAGGACAAGTAAAAGCGACTCACTCAGTTTTTCATTACATATTTGTCGTCGTTCTTTCTTTTGCTGAATCATGTTAGCTACGTTAAGCTAATCAAGCTAGCTGGCATTCTACAGTGAGGAAGAAGGACACTAATAATGGATCATGATGGCTTCAAATTCTGCAGTtgaaaaagCAACATGGCATGAAGGTGACAGTTGTCTGGCTCCTGACCCAAGAGATGGCACCCTGCGAGAAACCACCATTAAGAGACTGACCTCCACCTCTCATAATAATGATACCACAGCATGGGTGGTATTCACTGACCATAATAAAGatgcagaagaagaggaagaagaagaagtggaaGCTGTACCTGTCTCCAAACTCATGAGACCGGGCTTGAATCCCTTCACCCGGGAGAAACCTGTGTTTCCCAGCAGCACCACAGACACCAGGCTATGTGTCCCCTTAGAGTTGAGTGATGCTGATGGGGACATAGTCCCCTACACTATCAACCGATACCTGAGGGATTACCAGAGAGAAGGTATTAGGTTCATATACAACAACTACATCTGTTCCAGAGGTTGTATCCTGGGGGATGACATGGGCCTGGGAAAAACTGTACAGGTCATTGGTTTCCTTGCTGCTGTGTTGCACAAAACAGGCACGTGGGAGGACATCGAGAACAACAGGCCTCAGTTTCTGCAGAGTCAGATACCCTCCAAGCAAAGTAAACCCAACAAATTGTTCCTCATTGTGGCCCCACTGTCAGTGCTTTACAACTGGAAAGATGAACTGGACACATGGGGTCATTTCCAGTGTGTGGTGGTCCACGGGctgaagaaagaggaggagctGGCTCGCATCAAAAAGGGACGCATTGAGATTGCACTCACTACCTATGAGACTCTGCGCCTTTGTCTGGATCAGTTTAATAACATAGACTGGTCTGCTGTGATTGTGGATGAAGCCCACAAGATAAAGAATCCAAACTCTCAGATCACTCAGGCCATGAAGGATCTGAAATGTAAGATCAGAGTTGGCCTCACTGGCACCATCTTACAGAACAACCTTGAGGAGCTGTGGTGTGTCATGGACTGGGCCATACCTGGTTGTCTTGGCAGCTTAGGACATTTCAAGAACAGTATTTCAGATCCGATTGAGCAAGCCCAGAGGCACAGTGCAACCAAACGTGCCCTAGCTATAGGGAGGAAGACCATCAGAGCCCTAGTGAGGAAGATTTCCAAGTGGTTCCTCAGAAGGACTAAAGCTCTCATTAAGGAACAACTGCCTAAGAAGGATGACCGGGTAGTGTATTGCTCTCTGACAGACTTTCAGCAGACTGTGTATCAGACAGTGCTGGACACTGAAGATGTGATGTTAATGCTGAGGTCTTTGGAGAAATGTGACTGTCAAAGTGGACGCACCCGGGGAAGATGCTGCTATGATACAAACTCAGAAGGGGCACAAATGAAGGCGCTGTACTTTAGTTACCTGGCCATATTGAGGAAGGTTGCCAACCATGCGGCACTGCTTCAGTGCACTGCAGGCACCAGCAAGAAACAGGAGAAGTATGTGGGTGGCATCTGTGCAAAGGTATTCCAAAAGTTTCCAGACTTTGTGCAGAGATGCAAAGATGAAGCATTTGAGTCCTTGTCGGACCCGATGTACAGCGGAAAGATGAAGGTTTTGCAGAAGCTGCTGAAACATTACTTGCAAAGGAGAGATAAAATacttattttttctctctcaaccAAGCTGTTAGACGTGCTGGAGAGCTACTGCATGGCAGAGGGGCTGGACTACAGCAGGTTGGACGGAACAACCAAATCCAAAGACAGAATGCAGATTGTCAAAGAGTTCAACAGCTCCACTCGCATCAACCTCTGCCTGGTTTCCACCATGGCGGGTGGCCTTGGTCTTAACTTCATAGGGGCCAATGTGGTAGTGCTCTTTGACCCCACATGGAACCCAGCCAATGACCTCCAAGCTATTGACAGGGCATATCGTATTGGCCAGTGCAGGGATGTGACTGTTCTTAGGCTGATCTCATTGGGGACTGTAGAAGAGGTTATCTACCTAAGACAAGTTTACAAACAGCAATTGCAGTGCTCAGTTGTGGGCAAGGAGAGTGCGCGGCGGTACTTTGAGGCAGTGCAGGGCCATGGTGTCCATAAGGGGGAGCTGTTTGGGATCAAAAACCTCTTCAGGCTGCAGACCCAAGGGACATGCCTCACCCGCAAGATACTGGAGCGAGAAGGACGAGTGGAGGCCGGTGTAATgaccagcagcacacacacaggcgaaGAGAATGAGGAGGAGACGAAGGCACTTAGCgAACCTAGAGGTTTTCCCGCTATAAATGGCCCTGTGCCGAATGATGAACCAGCCAAGGATAACAGAAATGCATCAAAGGTCCCCAGAGGGGTGTTGGACTTCAGCAGTGGGAGtgaagaggatgaggaggagcagGGTCCCAAGAGGAAAGTGTCAAAGCCCAGTGCAGTGGATGGCAACAGGGGTGCAAATGCTGCCACTGGTCCTGGTCGAATGAGTCTTCTCCAGCACGGTTTCTCTAGGCTCCTCGAAAGGGTCAAAGAAAAACCAGAGTTAGCAGAAGGGGACAGTAGTCCGGGGTTCGAAAGCCCCCCTGAGGAAGATGCTGAGGATCAAAAGATTGAAAGTACCTCCTCTGGCATCTGCAAGAGCTCCAATATAGGAAATGGTGCAGCCTGTCTCCCTAAATTGAAAACAACAACCTGGGACATCTCCAGCAGAGAAGATGGGGAGAATGGAGATGCGGGGAGACAAGAAAGGGTGTCTCTGTTGAAACAGAGTAATGATGCTTTAAGAAAGAGAAAGGGCCTGGAAGGGTGGACGGATAAGAAAATTACAGTAGATGAGGAGAGTGATGAAAATTCCTCACCAGATAAGAAGAAACCCAACAAGCTCAAAACTCCAGTTCCGAAAGTGCGCTGCTTTGAGAGTTACTCCGATGAATCCGAGGATTTGGACATAGAGGCAAAGACGTGGCCCAAGAGGGACGCTTTCAAATCACATGGTAGAGGACGTGACCATGGGAGACAGAGGTTGGACCACAACAGAAAGCGGGAAAGCGCAAGTGTTGGGCGCAAGGCCAGATCCAAATACACAGAAGACATAGACACATTCACATCATCCTCAGAAGATGAACACACTCCTGTTAAGAAAGGGAGATCTACAGGATGTCACTTCACATCTCCACAGACCGAAAGATACCGAGTTGAGTTGCCAAAAGATGGTCAAAGAGCTGCAACAACCGACAGGACAGAGAGACAAGCAGAGATGTGCAAAGCTGTGTCATTTACAAGTCTGAAAAGTCAGACATCCCCGGCGTCCAAAGAAAAGGATGGAACTATCGACAGTGTGCTAGGGGGTGTACAAGAGGTGGCGTACACCCACTCTAACCAGCGAGTGGTGGGCGGGAGCAAAGCAGAGGAGCGGATCAGCAGAGCTGCTGTACGAGACGTGTTTGAGCGCAAGATGTACTCTCAGCTCCCGGCCAATCACCTTCTAGGAACCCAGGAGAGCCTTTCATCGAGCCCGCCAGACAGTCAGCCTTGCCCTTCTACTGTCAGACTTGAGGAGCCCAGTGTGGACCATCCAGTCACCTACACCAACAAAAGTGTGCATCACACCAGACACACCACTTTTATCATCGGAGAGACTCCCCAGGCCATATGCAGGCAGCAGCTGGAGGAAATGGCAGAAACCTTCAAATTTGCCTCAGTCCATCGGTTTGCGGTGGAGAtactaagaggaaactcaaccCAGAGACTGGCCTGGCTACGACAGTATTACACTTCACTGAACCACCCTGACCTGGCCAATACAGTCACAAACAACTTCCCACAACCTGATTCAGCACAGACCTCCTCCTCTTTAACGATTACCTCCTTAACATCCACCGTAACAGCCGCAAAATCTCACACACATACCGAAACCCCACAAAAGCATGTTCCAAAAGCTAAGTGGAAGCCTGAAGACACTCCTAAGAATACTGAACCTAAAACTAAGCCTGAAACCCCCCAAATCAACGTTTCTGTACCACAGAAACAGTCTAGACACCAAGAAGATGATGTTCCCGAATCCCAGACAAAGCATGGAAACccacaaaaaaatgttctatCAACCCAGAAAAAGCAAAAGATCCCACAAAAGAATGTCCTAGAACCTCTTAATGATGTTCCAAGCCTTGAGtccgaggagcaggaggagccgGTCTGCAGTGCCAGAGGACATAAGAGGACAAAGAGGGGTAGTGTTTCTAGTTCTGGAGCCTTCAGAGCTGGTGGTGGTCTTGGCTTGGATCAGGCCAGCAGCAGTGGTCTGGGGTCTGGGGAGGCTGCTGCTTTGCTGAACTGCACAGACAGATATATCCCTTCTTCTCCGGACCTCAGCCATGGCAGGTCCACCACATTATCCAAACCCACAGCACAGGGAAGGGAGCAAAAGCAAAAATTGCCTTCAAGAACCAGCGCAACTATCCAAGACCAGAGAGAAAATCGTCAGACCTCTTCTCCTCCTGAGCAGGCCGCATCCACCTCCAGTCATCGTTCCCTCCTCACAGATCTGATAGGAGACACCTCAATCCTTGATGATCTGTTAAAACCCAAACCCAGGGGTGCACAACAGAGAGGCGCCCCAAAAACACCCCCTGCTCGCCCCTCCGTGTCAGTAAGCACAGGTTTCACCACACCATCTCCATCCAAAATCACTCTCAAAACTGATTCCGGTTTAGCAGGCCTCGTAGACTCCTTGTGCTCTCCAAACTCAAACAAATCACGTGCACACCAGGTGGTATCAAAGGGCACTCGCAAAGATTTCTGGGACATCTTGAATGAGGGTAATGAGGAGAGCATCAACAGGTTAACGGATCCAGCAGAAGTGCAGAGGGTTTGCATCAACACTAACTTTGCAGCAAGAGGTAGGTCTGGAGAAGAGGACAGCAAGAGTCTCTGGAAGACTAATGAGAAGTTCCTGTGGAAAAAGTAAAACAGGAGAGATGATTTAACTAGcgttaaaagtttatttttcccttctgtactttctacttccGCAGTTCTAAATGGATATTTAAAGCAGGTTTTCCTGCCTCAGatctttattatttttaaatctcaTTTGTACCGTTCTTCTCTTTTATTCACTCTAATTATTAGAAAATATTTGTGTTCATTGAATTAGTAAGTTACTAATGCCGACTGTACTTGAATAAACAGAGTGTTAATCACTCTGGGAATTTAAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K20098 ERCC6L2; DNA excision repair protein ERCC-6-like 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85820 lncRNA upstream 142170 23525647 ~ 23562232 (+) False LOC120560905
TU85783 lncRNA upstream 261089 23431481 ~ 23443313 (+) False LOC120560908
XR_005639533.1 lncRNA upstream 261421 23435058 ~ 23442981 (+) True LOC120560908
TU85782 lncRNA upstream 271929 23430690 ~ 23432473 (+) True G64026
TU85721 lncRNA upstream 423293 23274920 ~ 23281109 (+) True G63976
TU85900 lncRNA downstream 12295 23734824 ~ 23735293 (+) True G64127
TU85904 lncRNA downstream 22410 23744939 ~ 23749835 (+) True G64130
TU85948 lncRNA downstream 292549 24015078 ~ 24017068 (+) True G64172
TU85963 lncRNA downstream 327439 24049968 ~ 24058761 (+) True G64183
TU85970 lncRNA downstream 378977 24101506 ~ 24104352 (+) True G64188
XM_039803796.1 mRNA upstream 142117 23487967 ~ 23562285 (+) True LOC120560905
XM_039803798.1 mRNA upstream 216896 23408216 ~ 23487506 (+) True dock8
XM_039804011.1 mRNA upstream 350138 23352950 ~ 23354264 (+) True LOC120561043
XM_039802627.1 mRNA upstream 373854 23283079 ~ 23330548 (+) True LOC120560302
XM_039803178.1 mRNA downstream 31796 23754325 ~ 23904577 (+) False ipo11
XM_039803179.1 mRNA downstream 36192 23758721 ~ 23906456 (+) True ipo11
XM_039803739.1 mRNA downstream 270124 23992653 ~ 24000805 (+) True si:dkey-250l23.4
XM_039802040.1 mRNA downstream 281553 24004082 ~ 24013484 (+) True rgs7bpa
XM_039802041.1 mRNA downstream 281556 24004085 ~ 24013484 (+) False rgs7bpa
TU85875 other upstream 11111 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 774197 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 2105603 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 3026486 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 3215564 20477812 ~ 20488838 (+) False wdr31
XR_005639471.1 other downstream 1101189 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 1101190 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 1962443 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 2191853 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 2690340 26412869 ~ 26414597 (+) True G64814

Expression Profile