RNA id: XM_039803804.1


Basic Information

Item Value
RNA id XM_039803804.1
length 2689
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC120560914
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 35380725 ~ 35394499 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATATCTTAATCACATCACACATGAAAATAACAtgttctctgtctttagttCTTTAGAGGAATAATAACAGGTGCAGAAAAGGGATGGACGCTTTTGGATGTTTAAAACGAGCTGGTCTTTTGAGTATATTGCCATTTTCACCATTACAGTAAGATGGACATTTGGTCTCCTAAACTGCACCTTGCTACGTGGACTGTGATGAGcttcctctgtgtgttttctcatGaggTGACGGTGAGGGACTCTGACCTGAAGCTGTGTGAGAAGGACGAGCGATTGTGTGTCACTGACCTCAGAGACTGTGCCCCTCGACCTCCTGCATCTATACAGAAGACGCTGAACATGTCCTGTTGCTACCAGATATCACACAGATCCATGACATGTGAGTGGAGTCAGGAGTCAAACAGCTTCACTGAGTCTGACGTCTCTCTCATCTTCAGCAGCGGAGATACAATCATATCCTGTCAGGGAATCTTCAACCCTGCAGCTGTCCTCAACATAACAGCTAGGATCAAAAACTACATGATGGGGAGGGAGATCTGGTCCCAGCCTCATACTGTATTTCTTTATGATGCAGTCAAACCCTCTCAGCCTGTATTAACTGTCCTTGGCTCCACTGAGGACTCTATTGTTGTGTCTTGGAGAAGCAACGTTGGTGACGGCAGTTGTCGGCTTCGCTACAGAGACAACAACACTCACACATGGACCCAGGCTCCAGATTACGTCCCTGCACATCAAGATCAGACACTGACCTACACGATCACAGACCTCCTGACGTTTACCGTCTACAGAGCTGCTGTGGCCTGCAGAGAGGACTTCGGCATCTGGAGCGACTGGAGTTCTGACGTCAGCACGAGGACGCTGGATAgggTGCCCTCCAGGCCTCCAGAGGTGTGTTACAGAGTGGAGACAACAGACTCTGGTGGATCTTTTCTCCTTCATCTCATGTGGAAGgaccTTGACCTCCGTGATGCCAGAGGTCGTATCCTTGgataccaggtgagctacaagCCAGTGAAGAAGCAGCAGCTCCAGGACAGAATAATTCAAAATGTCACAGATGTGACGGCGCTCCTGGTGGtggaagaggggaactgcagtgTCACAGTTACTGCCTTCAATACGGCCGGCTGTGGACCTGCTGCACATCTCCGcattgacacacaaacacagaacaCTCTCTCGTCAGTCAGAAGCTTATGGGTGTCCAGTTCTTTCCCGGCTATGAAGGGCCTACTGGTCCAATGGGAGAGCCCCACAGCCTCGCCCTCTGTCCCGCCTGTCAGTCATTTTGCTGTTCAGTGGCGCTCCGAGACTCGTCCATCCACCAGCCGCTGGACCACAGTGGGCTACAACACCACCTCCACTGTCATACGAGATGTTGACCCTGATGAGTCCTACCTGatcagtgtgttccccatctaCCCCCATCAGCAGTGTGGATCTCCTCAGTTGCTGCCTGCCAGTCTGCAGCAAGGAGCACTGATGGAGCCGGTCCAACTGAAGGTGGGGGTCGTGACCAAAACCACAGTGACAGTGGTGTGGGTGTGGCAAAGGAAGGCTGGACCAATCAGAGTGAACAGATACAGAGTCATGCTGACAAAAGAATTGGAGAGCAAAACACTGTCTTTGTGGCCGGACCAATGGCAGCTCACCTTCAACAACCTGAAACCCAACACTGAGTATTCTCTTCTCCTATTGGCTGATGATGTTTCCAGAAACATCATCCCTGTGAGGACAGACTTTGATGAGATGCCAGCGGTGGCTACAGCgactcctctgctgctgctggctgtcaCTGTGCTCATCATCTCCATCCTGTCCAGGACTGTGTACAAGTCGTACTTCTTCCCGCCCATCTCCAGCCCCCGGGCCAGTACGACAGGCCAGTGGCTGATGGACCCAAACCACCAGAAAACTGCAGTGATAAACCTCCTGGATATTGAGGACTTCCAGGTGACAGACGTACTCGGAGAGAAGAGTCTCATCACGGTCTGTCCGAATGTCCAGCCCTCCTCAGAAGAGGACCTACATGAAGACACCTCTCTGCTGTTGATCAGCCGCCTCATCATCAAACCGTCAGCCCTAGAACTGGACCCAGAGTATATTTCTGATGCTCCAGTGATCACAGAGCACCCACTGGTTTCTCTCCAGTCCTACCATGCTGACTACACAGTGAGCTGCCGACATCCTGACACAGTTTTCCCATCTGAGGAGAGCAGTGAGGCCGACGCTGCTATGCTGCATCAGACACGTGAAGCCAACAGCTGCTTTCctcagaaagaggaagagagtgacTTTTCTGAGAGGTTACATCAGAAGGAGAAGGAAACTGCACTGAAATGTCATTTTCCTGAATTCATGGAAAACAGTCACTGTGCTTATCAGATAACCTGTGAAGCAGAGtatgtttcttcttttctggGGAAAACAGATGTGTAAACAGTGAGTGGACACTGGTTTTATCTGATCTGTGAGACTGATTATGGACAGAGTACTTCAGTGCAACATGCCGGGTTAAACACAGGTGGAAAAGTGAGAGTAAATGGTTACAGACATGCTGGTGATTCCTGGCTGTAATCTCTATTACACAGCAGACAACCTACTGTATTCTTAACCACTGGAGGGGCAAAGCACATTGCTTTGGCTGGTGGGTGGCACCTGAATTAAAAGAGTGTATTCTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639572.1 lncRNA upstream 122653 35255661 ~ 35258072 (+) True LOC120561203
TU89494 lncRNA upstream 378529 35000278 ~ 35002196 (+) True G66907
TU89403 lncRNA upstream 516035 34861499 ~ 34864690 (+) True G66832
TU89406 lncRNA upstream 551071 34828892 ~ 34829654 (+) True G66834
TU89399 lncRNA upstream 564398 34815589 ~ 34816327 (+) True G66830
TU89604 lncRNA downstream 11396 35405895 ~ 35417807 (+) True G66997
TU89791 lncRNA downstream 476924 35871423 ~ 35993376 (+) False G67152
TU89792 lncRNA downstream 476924 35871423 ~ 35877725 (+) False G67152
XR_005639503.1 lncRNA downstream 500652 35895151 ~ 35896357 (+) False LOC120560688
TU89802 lncRNA downstream 500680 35895179 ~ 35898183 (+) True LOC120560688
XM_039804040.1 mRNA upstream 171010 35200417 ~ 35209715 (+) True LOC120561082
XM_039803781.1 mRNA upstream 198729 35161583 ~ 35181996 (+) True LOC120560891
XM_039803782.1 mRNA upstream 198729 35161583 ~ 35181996 (+) False LOC120560891
XM_039804099.1 mRNA upstream 220071 35145750 ~ 35160654 (+) True slc2a8
XM_039803886.1 mRNA downstream 68792 35463291 ~ 35522112 (+) True znf608
XM_039803303.1 mRNA downstream 128170 35522669 ~ 35549231 (+) True LOC120560625
XM_039803310.1 mRNA downstream 202307 35596806 ~ 35603337 (+) True LOC120560628
XM_039803308.1 mRNA downstream 212969 35607468 ~ 35611982 (+) True LOC120560627
XM_039803309.1 mRNA downstream 213018 35607517 ~ 35611982 (+) False LOC120560627
TU89504 other upstream 321107 35046855 ~ 35059618 (+) False LOC120561428
TU89401 other upstream 516459 34861499 ~ 34864266 (+) False G66832
TU89402 other upstream 516459 34861499 ~ 34864266 (+) False G66832
TU89404 other upstream 516459 34861499 ~ 34864266 (+) False G66832
TU89395 other upstream 607025 34765946 ~ 34773700 (+) False LOC120561070
XR_005639497.1 other downstream 128166 35522665 ~ 35547463 (+) False LOC120560625
TU89783 other downstream 446375 35840874 ~ 35852056 (+) True G67146
TU89780 other downstream 447035 35841534 ~ 35854161 (+) False G67145
TU89779 other downstream 447579 35842078 ~ 35854161 (+) True G67145
TU89790 other downstream 476924 35871423 ~ 36023264 (+) False G67152

Expression Profile