RNA id: XM_039803808.1


Basic Information

Item Value
RNA id XM_039803808.1
length 994
RNA type mRNA
GC content 0.53
exon number 7
gene id cfap77
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14548679 ~ 14555480 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCATACATCCATGGCATCGATGTAGCTcactcgtggatgtattaagagaaaatcTCACTCTGTTAAACTTTCATCTGAAACTTCCTGTTgaacagttgttgttgttttctggtGCAGTTTTACGTCAAAGTTTAGCGTCATGTTTCCATAGCAACGGAGCAGCTCGACACCCGAGGACACGGATAGAAGACCGTCTTCACAGGAAACATGTCTTCACCCAGGGTGGGTGTGGTCAGAGACTCCATGTTGACCAGACCACTGCTCATCAAGGCATCTTTGGGTCAGACCAGGTCCAGAGGTCTGTCAGTTCCTGGTCCAGAGTTCACTTTTGGAACCAGCAACTTGATCAGAGATGGAGGCGTGTCCGAGGTTCTGTCCAGTTGGAGGGTTCAGTCCAGACGTGGACACTCTGCTCCTCATCAACCGCTCATTACCGACTTTGTGTCTCTGAACCGGGACGCAGTGAAGTCAGGTCTGGTGACAGCCAAAGAGCTGAGTCAGTACCGGGCTCAGAGGGGCGAGGCCAGGAGCAAGATTCCCGCCCCCAAACAGAAGGAGGGCAGGGCTTCACGGCACCCGACGGTGCCTGACATCACGTTTGGAGTCACAACCAGGGTGTCGTCTCCTTTGTCAGACCTCCTCTCTCATGAGTATGCTCGCCGCTGGATGGACGAACAGCTGAGCAGGAATCAAACCAGCGACCACAAACAGCTGCAGAGGATAAAACCAGGATGTATTCCCGACACAAGGACCAGCCTGCTGAGGAGGAGCAAAGCTCTGCCCGTCACACAGACGCCATTCAAGCTGCCCCGCTTTATACAGGCTGCTCCGGCTCTGGACACCTTCAGGGACCAGGACGCTCGTCTCCGGGCGGTCAGGGCTCATCAGTCAGACTCTGTGTCCAGGAGAGGAGTTCAGGGTCTGGGGATGTACAGTCTGGACTGAACTGTGGAGGAAACATGTTCAACcttaattcaaataaaaaagaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82340 lncRNA upstream 49246 14499180 ~ 14499434 (+) True G61468
XR_005639539.1 lncRNA upstream 49623 14497781 ~ 14499057 (+) True LOC120560938
XR_005639538.1 lncRNA upstream 49623 14497798 ~ 14499057 (+) False LOC120560938
XR_005639540.1 lncRNA upstream 49623 14497838 ~ 14499057 (+) False LOC120560938
TU82334 lncRNA upstream 76579 14469213 ~ 14472101 (+) False LOC120561032
TU82392 lncRNA downstream 120657 14676137 ~ 14677372 (+) True G61513
TU82398 lncRNA downstream 144045 14699525 ~ 14754056 (+) True G61514
XR_005639594.1 lncRNA downstream 199970 14755450 ~ 14762495 (+) True LOC120561401
TU82458 lncRNA downstream 470961 15026441 ~ 15027400 (+) True G61539
TU82459 lncRNA downstream 472125 15027605 ~ 15027818 (+) True G61540
XM_039803999.1 mRNA upstream 94434 14450851 ~ 14454246 (+) True pla2g1b
XM_039804211.1 mRNA upstream 103528 14437825 ~ 14445152 (+) False prkab1b
XM_039804210.1 mRNA upstream 103528 14438024 ~ 14445152 (+) True prkab1b
XM_039803816.1 mRNA upstream 115380 14431388 ~ 14433300 (+) False LOC120560925
XM_039802548.1 mRNA upstream 119248 14405145 ~ 14429432 (+) True msi1b
XM_039803810.1 mRNA downstream 909 14556389 ~ 14563699 (+) True barhl1a
XM_039803267.1 mRNA downstream 71141 14626621 ~ 14642212 (+) True LOC120560602
XM_039803269.1 mRNA downstream 71171 14626651 ~ 14642211 (+) False LOC120560602
XM_039804189.1 mRNA downstream 91247 14646727 ~ 14666265 (+) True LOC120561189
XM_039802857.1 mRNA downstream 122191 14677671 ~ 14753400 (+) True grin1b
TU82322 other upstream 114083 14431330 ~ 14434597 (+) True LOC120560925
TU82315 other upstream 156102 14389603 ~ 14392578 (+) True c6h12orf43
TU82226 other upstream 229174 14317539 ~ 14319506 (+) True G61390
TU82227 other upstream 229174 14317539 ~ 14319506 (+) False G61390
TU82219 other upstream 264809 14283417 ~ 14283871 (+) True G61383
TU82404 other downstream 200045 14755525 ~ 14762489 (+) False LOC120561401
TU82405 other downstream 200045 14755525 ~ 14762549 (+) False LOC120561401
XR_005639550.1 other downstream 219033 14774513 ~ 14786109 (+) False surf4l
XR_005639549.1 other downstream 219034 14774514 ~ 14786109 (+) False surf4l
XR_005639552.1 other downstream 219063 14774543 ~ 14786109 (+) False surf4l

Expression Profile