RNA id: XM_039803814.1


Basic Information

Item Value
RNA id XM_039803814.1
length 3111
RNA type mRNA
GC content 0.50
exon number 21
gene id ddx31
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14566031 ~ 14580163 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCACAAAATCAGCTGTGAAGGAGACGGGGCTTCAGTGACGTACCAGGAAGAGATCCCCACGCGTGTAGTTTGGTTGTGTTTTACGGTGTGCTGATGATGTCatcggcagcagcagcagaggaccAGCTGTGTCTGAACATCTGCAGCAGTTTCTCCCCCTCTTCATCCCCCCGGTCAAAACCTCTGACTACTCAGCAGAGATGGGCCAGAAAGAAGCACAACGCCGAGAAGAGAAGGATCAACTcctcagaggaggaggagaagaagagaggctCCTTCAAACAGAGGAGACTGGACAAGAAAGccgaggaagaagaagaagaagaagaggaggaggaggaggtgcagACTGAAGCTTCTCCTCCTGCAGACACTCAGacagacaggaagacaccacagaagaagaaggatgCAGTGAGGGAAACAGGAAGGAGCAGCATCAAGACTTCCTCTCTGTTTAAACACAACCCAGAGATCCCAGAGTTCCACAGACCAGTTGTCTCCCAGTTAAAAGAGAAGATTTTCACCAGTGACTCATTTTCAGACATGGACCTGCACCCACAcctgGTGGCGACACTGAATAAAGTCCTGAATGTTTCCACAGTGACCAgtgttcaGAAACGGACTATCCCAGTTCTCCTGTCAGGACGAGACGCTGTCGTTCAATCTCAGACGGGTTCAGGTAAGACTCTGTCCTACGCCGTCCCCGTGGTTCAGAGTCTGCAGGGGCTCCAGCAGAAGGTCAGCAGGTCCGACGGTCCTCTGGCTGTCGTCATCGTCCCAACAAGAGAGCTCGCCCAGCAGACGTTTCAGACCTTCCAGAAGCTTCTAAAGCCGTTTACCTGGATCGTCCCAGGAGTCCTGatgggaggagagaagaggaaatcGGAGAAGGCCAGGCTTCGTAAAGGAATCAACATCCTGGTGTCAACTCCTGGACGTCTTGTGGATCACATCAAAAACACACTGAGCATCGCCTTCAGTGCTGTTCGCTGGCTGATCCTGGACGAGGCAGACCGgACGTTGGACCTGGGTTTTGAGAAGGATCTGACTGTCATATTAAACAGTCTAAACTCTACAGGACCAAGCAGACAGAACGTCCTGCTGTCTGCTACATTAACACATGGTGTAACTCGGTTAGTAGACGTTTGTCTTCAGGACCCAGTTAACATCCACGTGTCTGGCTCCGCCTCCTCTGACCTCACCACCACCAGCTCTgctgtgacctctgaccccagCACAGCCAGCCAATCGGAGAGCTTTGCTTTGCCAGAGGCTTTGAAGCAATATGTGGTAGTGGTTCCCAGTAAGATCAGACTGGTCTGTCTGGCTGCTTTCATACTGGACAAATGCAAGTTTTCTCAGAACAACAAACTTATCGTCTTCTTCTCGAGCTGCGAGGCCGTCGAGTTCCTGCACTCCCTCTTCACCTCCGTCCTCTCTGGGCCCTCCACCGATCAGAAGCCTCAGCTCTGCTTTCTGCGTCTCCATGGCAACATGAAGCAGGAGGAGCGCTCTGAGGTCTTCCAGCAGTTTTCCGTGTCTAATTCTGGAGTCCTGCTGTGTACGGATGTCGCAGCCAGAGGTCTGGACCTTCCACAGGTCACCTGGATCATTCAGTACACTCCTCCCACGGCAGCAGCAGAGTACGTTCATCGTGTCGGTCGGACGGCCCGTATCGGAGGAAGAGGtagcagcctcctcttcctcactccTGCTGAGACCGCCTTCATCACCGAACTGGCCAAACACCACATCAGCCTATCAGAGCTGAAGCTGCTGGACATCCTGTCCAGTCTCATGATGGATGACACCTACAAGGGGCGGGGCAAATACTACAGCAAGagttCGTCTAAAGCCCTGGAGCAGGAGACCAGAGAGAGAGCGACGGTGCTGCAGACAGAATTTGAGAACTTTGTTCACTCAGACGCTCAGTCAGTGCAGAACGCTAAGAAAGCGCTGCAGTCCTTCCTGCGGGCATACACCACCTACCCTGCCCACCTCAAACACATCTTCCACATCCGCTCCCTCCACCTGGGACACACCGCCAAGAGCTTCGGCCTCAGAGACGCTCCGCAGGGCCTGAACGCTGCCCCGGGCCCCGGGGCCAAgacccacaacaacaacaagaaccagaaccagaacaaGGGGACCAGCAGCCAGAAGGCAGGAggaaagagGTTCTCTCGCGGTCAGAGGGAGGTCAGCCTGCTCTGCTCCGAGTTCTCTAGCGGGTTGGAGGGAGCAGACGCCAAGaccaagaagaaaaagaagaagacgacCACATTTGGTCAgtcaggagaggaggaagaggaggaggagtaatGAGGAGGTGCAGCAGCTGGAGGGCCTATGAGCGAAGGTGACGACCTGCAAACAGCTGACTGACTCGCTGTTACAGACACACATCAGACTTTTAGTTGATTAGATAATGAATCTGGATCAGAGTGCAGACGCGGACCTGAAGTCCAGGAGACGTCTGACTGTGTTCAGACAGATCGATGACATTTACATTGCACACAAAGTCAACAGAAAGACATGATTAGTAAATGTCGAAATTTGAGTGAAACATTGACGGTTATGCTGAAGTCTTCATGTAAAAACAGGAGTCTGCGTCTGTTGCATGTTAGCTTCCAGCTAACGTCGGTACAGTGGGTTCAAATCCAGTGAACGATGCTTCACTCTTCCTGTctgaacacacatttaaaatatctgATATAAAGTTTTCTGAATTTGACAGGAAACAATCTCAGAATACAGTTTTTCATACATGACTCTTCTCTGTAAGACATCTTTAAAATGTTGTTGTACTGAAATGAACCCAGGCTCCCCTCTGCCTCAACAGTTGCTTTACCTTTCCATCTTTTTTAAAGGCTAGATTTGGTTTCAAGATGGACTCTGATGGCTTTAACAACCTGGTGTTTCAGCACAAACTGAAGACCAGACGTGTTTTTATTGTTGAAGTCTTCACAGATTCAGGATAATGTGAACAGGACATTTGTGTGTtctttaaatatgaatatttctaCTGTTTGATGACTTTGATgaagatttatttttctttgttggaaaataaaatgtaatttttgctcTTTGAGGGTAGAACCTAC

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639534.1 lncRNA downstream 6302 14559086 ~ 14559729 (-) True LOC120560921
XR_005639535.1 lncRNA downstream 9532 14554203 ~ 14556499 (-) True LOC120560922
TU82515 lncRNA downstream 80494 14485242 ~ 14485537 (-) True G61586
XR_005639560.1 lncRNA downstream 99677 14460926 ~ 14466354 (-) True LOC120561033
TU82509 lncRNA downstream 99701 14460991 ~ 14466330 (-) False LOC120561033
TU82547 lncRNA upstream 49448 14629611 ~ 14630973 (-) True G61601
TU82599 lncRNA upstream 218757 14798920 ~ 14799149 (-) True G61647
TU82581 lncRNA upstream 222401 14802564 ~ 14867657 (-) True G61631
TU82649 lncRNA upstream 385144 14965307 ~ 14965785 (-) True G61695
XR_005639490.1 lncRNA upstream 403304 14983467 ~ 14985185 (-) True LOC120560531
XM_039804218.1 mRNA downstream 18168 14535268 ~ 14547863 (-) True qsox2
XM_039802064.1 mRNA downstream 33272 14515799 ~ 14532759 (-) True LOC120559985
XM_039802065.1 mRNA downstream 37318 14515799 ~ 14528713 (-) False LOC120559985
XM_039803998.1 mRNA downstream 109719 14454088 ~ 14456312 (-) False asgrl1
XM_039803997.1 mRNA downstream 109719 14454088 ~ 14456312 (-) True asgrl1
XM_039804331.1 mRNA upstream 1921 14582084 ~ 14599142 (-) False ak8
XM_039804333.1 mRNA upstream 1921 14582084 ~ 14599142 (-) False ak8
XM_039804330.1 mRNA upstream 1921 14582084 ~ 14599141 (-) False ak8
XM_039804332.1 mRNA upstream 1921 14582084 ~ 14599041 (-) True ak8
XM_039803266.1 mRNA upstream 20098 14600261 ~ 14625197 (-) False tsc1a
TU82089 other downstream 976699 13589039 ~ 13589332 (-) True G61264
TU81433 other downstream 3376290 11189142 ~ 11189741 (-) True G60715
TU80745 other downstream 6163465 8401022 ~ 8402566 (-) True G60145
TU80531 other downstream 6678628 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 6981512 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_252 other upstream 358812 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 364333 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_254 other upstream 368596 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_255 other upstream 371339 14951502 ~ 14951583 (-) True trnas-gcu
unassigned_transcript_256 other upstream 387516 14967679 ~ 14967760 (-) True trnas-gcu_1

Expression Profile