RNA id: XM_039803824.1


Basic Information

Item Value
RNA id XM_039803824.1
length 3017
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC120560931
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19029407 ~ 19074342 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGTGATACCTGCCTGAAAAGGATCGTCAGGATACACCACTACCACACAACAAGGCTTACTCACCAAGAACCAGTGTTATAGTCAGCTGCAACCCCACCCAGTCTGCTCTGACCTACAGCGTGTACACTGATTTAGCCCAACCTTCTCTTCATAAAGATATGAGACGAGTTGTACGGCAGAGCAAATTCCGTCACGTCTTTGGCCAGGCGGTGAAAAATGACCAATGCTACGATGATATCCGGGTGTCAAGGGTCACATGGGACAGCTCCTTCTGTGCAGTTAACCCCAAGTTTGTTGCCTTAATTATTGAGGCCAGTGGTGGTGGAGCTTTCCTCGTTCTCCCTCTTCACAAGACGGGACGCATTGACAAAGCCTACCCCACAGTGTGTGGTCACACAGGGCCGGTGTTGGACATTGACTGGTGCCCTCACAATGATCATGTCATCGCCAGCGGCTCTGAGGACTGCACAGTGATGGTGTGGCAGATTCCTGAGAATGGCCTTGTTACTTCCATGTCTGAGCCATTGGTGGTACTGGAGGGCCACTCCAAGCGCGTTGGCATCATCACATGGCACCCAACAGCACGCAATGTCCTTCTTAGTGCAGGTTGTGACAACCAGATCTACATCTGGAACGCGGGCACGGGAGAGGCAGTGATCCGTCTGGAGGACATGCACCCTGATGTCATTTTCAACGTGACCTGGAACCGCAACGGCAGCCTTATCTGCACTGCCTGCAAGGACAAGACCATCCGTGTCATCGATCCCCGCAAGGaggcgattgttgccgagaaggagaaggcacATGAGGGCGCTCGACCCATGAGGGCCATTTTCCTGGCTGATGGCAACGTCCTGACCACAGGCTTCAGTCGCATGAGTGAGAGACAGCTCGCCCTCTGGAACACGgatAACATGGAGGAGCCCATGACTGTTAATGAGATGGACACCAGCAACGGAGTGCTCTTGCCCTTCTATGACCCAGACACCAGCATTGTTTACCTCTGTGGGAAGGGTGACAGCAGCATCCGTTACTTTGAAATCACGGACGAGGCTCCGTATGTTCACTTCCTCAGCACCTTTGCCACAAAGGAGCCCCAGAGGGGCATGGGCTACATGCCCAAGAGGGGGCTTGATGTCAATAAGTGCGAAATTGCGAGGTTCTATAAACTGCATGAAAGGAAGTGTGAGCCTATCGTGATGACTGTACCAAGAAAGTCGGACCTGTTCCAGGACGACTTGTACCCAGACACATCTGGACCCGACGCTGCCCTGGAGGCTGAGGAGTGGTTTGATGGCAAGAATGGAGACCCCATCCTCATCTCCCTCAAGAATGGCTACGTCCAGGGCAAGCACCGCGAATTCAAGGTGgtcaaaaagaacattttggaCAGCAAGGTGACCAAGAACTCAGAGAACTCGAGCCCTGCCAACAAGTCTGCCTCCTCAACTCCATTGATTAAATCTGAAGCCAAGCTGGAGGAGATCTTGAAAGAAATCAAATCCCTCAAGGACCTGGTCAGCAGTCAGGAGAAGCGAATCATCAAACTTGAAGATCAAATGTCCAAAATTGCCATTTAGGGACCCTATACCCAACCCGCTACAATTCAGGACGTTCCATTGGCTGGGGGGGTGGGCGGGGCCAGTCACTGCCTATCTCAATGACAGTGTTTCGTCTGAGGGCCTGCCTATCACCGACCCCTAGCAACATTCCAGATGAACTTTTTCTTAGCCAGCCCCCGACCCTCAGTTTAACACAGGTGGAAAAAGGACATGTGACAAATTTAGCAGAAAATACTCTTTGGTTTTTGGTGACAAAGGACTCCATTCCTTTTATTGTGTGGcggtttttattttgtctacTTGTATAAAAAGGTTTTTGCATTTTCCTTTGCATTTTTAGAAGTACAGTATGACCAAGACCATTCCAATATCAATAGTCCACATTTGCCATCAGATACCCCAATTTTAGTTTTAAGTAGGTATCCGTGTTTCATGTAACTATAAGCCAAAATTATAATGTTGCCAAATTGTACCATTTGTTTACACCTCCTTAACagtatttctttctctctctttgtgggAAGAGTCAAAATGTAAACGGGGACCCTCTGTGCAGTAGACTGGTTGTGTAAGGAGGTCATTAATAATTCACtatgaaattaaaataatttaaataagtTGGATGGCTAGGGAGATAGACATCTCAAACTGTAAGTAGGAGGAAATACAATTTTAGATTGAAGACCCATTTAGCTGCCACAGTCTACACCAAGCCACAGTCATTACATATATGACAATGTTCGCCATCTGTGTTGAATCTGCACAAATTTACTCTTGCTTTCTGCCATTCCTTCTCATTCCTGTCGCTTCCCGTCATTCTGACTGTGGACAATAGTCCACATAAACATGCATTCCTTTCCGTCTTGCTTCATTAACATGCACTGTGTGCTTATTGGAGAAAAACGACAAACATTCCACAAATCTCATTGGCAGTTCTTGGTTTCAGGAAAAACTATTTCTAAAAAGTTCCTCCTTCTGTGAACACTCTACTGTAGTGACTCGGTTGCACTGGTTGGTTGTTATAGTGACATCTACGTGCtgcccatgaaaagaccaaatttGTTGATTTTCAACCTCagctctgctttgtttttgtgagCGGTTCCGGTCACCGACATCTGTGTTCAGTAGCCACGGGCTTTGCGCAATTTACAAGTGGAGTCAAGTGTAGTGGGATTATTTTCATGTCACTGTTCCTTTGCATTAGATACCATCTCAGATCCGTATCTTTTGTACAAACTAAACCGGAATTGACATGAAATGACACCAAGTAATCACACATTGACTTGACTATTTAAAACCTTCTGGTGATAAAACTGGAGATTGCTACAGGAACTGTTCATGATAGACCTTAAAGGCCTAAGTTGTTTGTGAATATGTGCCCCCATGTCTCTGGTCTTTTGGGTACTTGTCAATCTGGATGTTCTTGCTTTGTTTCTTATTGGGGGTTATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84099 lncRNA upstream 59486 18966083 ~ 18982623 (+) True G62796
TU84019 lncRNA upstream 177302 18864575 ~ 18864807 (+) True G62755
TU84005 lncRNA upstream 269001 18772755 ~ 18773108 (+) True G62741
TU83993 lncRNA upstream 293613 18747490 ~ 18748496 (+) True G62732
TU84163 lncRNA downstream 6738 19081080 ~ 19081654 (+) False tmem119a
TU84161 lncRNA downstream 10592 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA downstream 11572 19085914 ~ 19086862 (+) False G62836
XR_005639511.1 lncRNA downstream 77191 19151533 ~ 19153584 (+) True LOC120560789
TU84387 lncRNA downstream 475068 19549410 ~ 19554906 (+) True G63005
XM_039803654.1 mRNA upstream 19228 19002298 ~ 19022881 (+) False ssh1a
XM_039803826.1 mRNA downstream 2219 19076561 ~ 19081600 (+) True tmem119a
XM_039803828.1 mRNA downstream 13455 19087797 ~ 19099604 (+) True sart3
XM_039804624.1 mRNA downstream 45803 19120145 ~ 19122475 (+) True cmklr1
XM_039802722.1 mRNA downstream 133437 19207779 ~ 19226925 (+) True limk2
XM_039802029.1 mRNA downstream 176834 19251176 ~ 19255928 (+) True tctn2
XR_005639481.1 other upstream 360948 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 622519 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 626103 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 710879 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 1032791 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 360565 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1403470 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1403470 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1602075 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2514534 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile