RNA id: XM_039803828.1


Basic Information

Item Value
RNA id XM_039803828.1
length 5048
RNA type mRNA
GC content 0.44
exon number 19
gene id sart3
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19087797 ~ 19099604 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACGCAACATCACTAGTTACCAGGCAGACAGCTTTTCCAACATGGCAGCGTCAAGCAACGCAGAGCAAACGCAGTTGCAAGATATGGAGGAGGAAGATGCAGGGATGGAGGAGAGGGATATGGAATCGGGCGACGAGCCGGAGGAGGGCATGGGAGAAGAACATTCAGACGAAGAAGAGGATGATTCTTCGGAAGACGAGAAAGAAAATGAAGCTGAGATCCAACGGTTGGAGGAGCAGctgtcaatcaatgcTTTTGACTACAACTGCCACGTGGATCTCATCAAACTACTCAAGCAGGAGGGCGAACTTTCCCGTCTGCGAAAGGCAAGGCAGAAGATGAGTGAGCTTTTCCCACTAACTGAAGagatctggcTAGATTGGCTCAAGGATGAGATCCGTCTGACTGAGGAGGAGTCAAACCGGGAGAAAGTATATGAACTTTTTGAGAAAGCTACAAAAGACTATATTTGTCCAGATATCTGGCTTGAATATGCTCAGTATTCAATTGGTGGCATGGGCTCACCAGGTGGGATAGACAAGGTGAGATCCATCTTCGAGAGAGCGGTGACAGCGGTGGGGCTTCACATGACCAAGGGACAGATGGTGTGGGAGGCGTACAGAGAGTTTGAGAATGTCATTCTGTCCACAGTACAGCCTCCCCCTGGCAGGATTCCCAGCCGCGAGGAGCAGGATCTGTTGAAAACTCAGCTTGATCGTATCCATACACTGTTTCGCCGCCAGCTGGCTATCCCCTTAATGGACATGGAAGCCACCTATGCAGAGTATGAGGAGTGGTCTGAAGATGGGGTGGCTGAGACGGTCATACATCAGTACAAAAAGGCTTTGCAGCAGTTGGCCAAGTGCAAATCTTTAGAAGAATCACTGATAGTAGCAGAGCCTCCTAAACTGGCAGAGTATCAGTCCTACATCGACTTTGAACTAAAGGAGGGCGACCCAGCACGGATCCAGATTATCTTTGAGCGGACCCTGGCAGAGAACTGTCTGGTACCAGACATGTGGGCAAAATACACCACCTATCTTGATCGTCAGCTGAAGATCAAAGATTTGGTTCTCTCCTCTCATGAACGTGCGGTCAGGAACTGTCCCTGGACCATGGGTCTGTGGAAGAGCTACCTGCTAGCTCTGGAGAGGCATGGAGCTGACCATCACACTGTCTCAGATGTTTTTGAGAAGGCGCTGAATGCAGGTTTCATTCAGGCGACAGATTATGTGGAAATTTGGCAGGCACACCTTGACTACCTGAGGAGACGTGTGGATTTCagcaaagaaTCAAGTAAAGAGTTGGAGGAGCTACGAGGAGCTTTCTCTCGGTCTTTGGACTACATGAAACAAGATGTGGAAGAAAGATTTGGTGAAAGTGGAGATCCTTCTTGTATCATAATGCAGATCTGGGCAAGGATAGAGGCCCTACACTGCAAGAACATCCAAAAAGCCAGAGAACTGTGGGACAGTATCATGACGAAAGGGAACGCTAAATATGCCAACATGTGGCTGGAGTACTATAACCTCGAAAGGTCTTACGGAGACCCTGTTCACTGTCGGAAAGCTCTCCACAGAGCAGTTCAGTGCACCTCCGACTACCCTGAGCATGTGAGTGAAGTCCTGCTCACATTCGAGAGGGTGGAAGGTTCTCTGGAGGACTGGGACGTGGCAGTGCAGAAGACGGAGACCCGGCTGAACAGGATTAATGAGCAACGAGCAAAGGTGGCTGAGAAAGAAGCCAACCTCGCTCGCCAAGAGGAAGAGAAAGCCGATCAGCGGCGGAGGACCAAGGTAGACAAGAAGGCTCAGAGGAAGGTCCAGAAGGGATCTCGAGTTGGGGAGAAGAGGAAAGCAGAGCAGGATGATTATCAAGATGAGTGGAATGATAACTCTGAACAAGTGCCTAAAAAGCACAGAGGAAATGGGGACCAAACCACAGAAGAGTACATGGAGACCGAGACAGGACTCTTTGGGAGGAACGCTCGCCCTGGCTATAAGCCGCCTCCACCCGGCAATAAAAGAGCCCAGCAGGGAGCTGCAGCCGGCGAACAGCAGAGCGATGACAAGCAAGAGCTTCGCAACGATAACAGCAGCGTATTCATCAGCAACCTGGCATACACCCTGAAGGAGCCAGAGGCAAAGCTCAGGACCCAGTTTGAGACCTGTGGTCCCATCAAACAGGTTCGCCCCGTCTTCGGCAACAAAGGGACCTTCAAAGGCTACGGCTATGTACAGTTTGAATCCCCAGTGTCTGTCCCTGAAGCTCTAAAGCTGGACCGCCGGGAGGTGGAGGGCAGGCCCATGTTTGTGTCACCTTGTGtcgacaaaaacaaaaatcctgACTTTAAGGTGTTTAAATACAACACAACCATAGAGAAACAAAAAATCTTCATCTCTGGGCTGCCGTTCACGTGCGCTAAAGAGCAACTGGAGGAAATCTGCAAAAGTCATGGCACCATCAAAGATATTCGTCTGGTCACGTATCGCTCAGGAAAACCCAAGGGTCTGGCATATGTTGAGTTTGCAGATGAAGCCCAGGCATCTCAGGCAGTTCTGAAAATGGACGGCATGAATGTAGGGGACaacaaaatctgtgttgctatAAGTAACCCTCCTCGCAGAAATATGATGGATAAACCTGGTTCCAACAGGCCCACAGACATGATGCCTCGCCAGGTCTTTGGATCgagAGGCAGAGGACGCACCCAGCTCTCATTACTCCCTCGTTCCCTGCACCGACAAAGTGGGCCTGGAAGCAAAGTCGAGAACGGGACCGCGGCTGAGCAGGTGCCAGCAACTGCTAGCGCAGTAGTGAATGCAGCCGGGGAGACGAAACCTTTGTCAAATTCAGACTTTGCCAGGATGCTTCTCAGCAAGTGAGAAGACGGAGAGAGAATTACGGCCGTCTTCACACTGAAAGCCGTCTTGTGTCCTTAAAAATCAGTGTTAGTGATTTTTCTGTAATTAGTTACCCGCCTTCCCTTTAATCTCAGTCCTGTTCTCATCATCCGTTGTGCGAAATTTGCCTTAATCGCTGAGCTCCTGCTCTCCGTGGGAAAGCCTTTTTGCTCAAGACTTTTCACCAGTGtgacagtttttgttttgtttgttgaagGTGGTTGGCCGGCTATTTTATAAAGAAAAGTGTATCAtatttgtgtgtaaatatactgtatctaaaatTGTACACCTCATGTTGCGAAGTGTCTTCTTTTGTTGTATAATGTGAAAGGAATCTGAGAGAATCATATAGGAGTGTATTTTTTCTCTCAAAACAGCCAAACTTGTGAATGTTGTTTAAAAAGGTTATATGCAAAAGTTCAGATGTGGTGTAATAtagattgtttgtgtgtgtgcgtgtgtgtgtttgtacagaaGTTGGATGTGCTACAGTGATTAAAAGACATTCTCCAGATATTTTTAGGATAGCTAGGATTTTTGTTGTGTAAATAATTTTAACCTCTGAGGACAAAGTTAACAAGGCTAGCAATGTCCTTTTTTCTGACTGTATAGtaaattaattcattatttTGACATAAAACCATCTGCTACTAATCATAAATATCATGATGCTATAGAGTGTCCATTAAGTTAGTATTAGTTAATTGGCTTTATCCTGGCATGAGGGCATGTTCTTACAGTATGAAATCATGTCCCACTGCTTACGTTTGATATCACTTCTAGTATTTACTGAACTGCTCCAAGTATACTTTCTCATGATTTCTCTGTTTTCAAACATCACTGTTAATGTGACCGGTCTGTTCATGGTAAAACCATCCATCATCAAATCACTTATATTGTTTTAGATATCGGTCTGATTTATGTGCTATGGGCTGAAAGGGAGAACCATATTCCCTTGACCTGGTGTAACTCAAGGAGTGCACATGTAAGCAGGGTGTTAATGATGCTGAAGAAATCTTTGGCTGCTTCGGTGGCTGCATGCCCAACAGTCGAGCTCGCAATGATTTGTTAATCGACAAAAttaattggcaactattttgataattatttAAGTCAAATTTATATTTCTGGTCTCAGATGTGAGGATTATTTGTGGATGTATATGTATTTGGGGTTTAGACTATTGACAGGACAAAATACATTTGATGACATCACCTTAGACTCCTGGAATTTGCGATGAgcatttttcagtttactcaAGTTTTGTTGACCGAGCAATTAAGAAAATAATCACCAGATTTATCCATAATAGAAGTAACCGTTACTTGCAGCCCTGCAGAAGTCCATTGATGTAATGTGTTGAATGAAAGAGTTAAAATATAACTATTAATGCTAGAAAGTACAGGTGGAACTCTGTTGTGTGTACACTGTAAAAGTGAATCCTTAGAATGTTATAAACTGAAACCTAAgtacagttttataaatgtggTTTGGACCTGGTTTTCTTTGTAATCGGTAGAGTTGATCTTATCCTCTGAATGATCTTGGTATGAGATGAGCCACACATGGCTGACAGCTCTTAAGCATTCTGGGTAAAGAGTCTATTGATGTCATATACACATACTGTGTATAAATTAAGAGAATCTATGCGGTTTTTCCATATCTATTTATTACGGCCATCGACTCTTCTTGTTTGGATATTAACAATTCTGTTTGTGTACATAATGTTAAGTATGCTAATTCAAAAAGGTCACCATAGTTTGTAATTAATATAAATCTAAGTTTTTGAAACTGATGGAATACAAGCTATATGTATTGCTCTCACCACTGTGGcctaatctaaaaaaaaaaaaatctaaatatgttGGTCTCTAGAGTCACCTTCCTTTTTATGTCCAGTACTAAAGGTGGTATGTGTGCATTGCTGTTGTTTTGCATAATTTCTATAGTCAATGTTTTGAATTTGATATAGAGGTAAATAATAAATGGAGTTTTCTTGTGTTCTATCACAGTATTTATCTACCTGATTGTTTCATTATCTACCACTTTACCCTGTGTTTTTGGgtcctgtaaaaaaaagaaaaaagtcatgtatttttttctggCCTAAAACTTGTTTTAATAAAGTCATGTAAATCATC

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0048538 thymus development biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K22611 SART3, TIP110; squamous cell carcinoma antigen recognized by T-cells 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84161 lncRNA upstream 935 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA upstream 935 19085914 ~ 19086862 (+) False G62836
TU84163 lncRNA upstream 6143 19081080 ~ 19081654 (+) False tmem119a
TU84099 lncRNA upstream 105174 18966083 ~ 18982623 (+) True G62796
TU84019 lncRNA upstream 222990 18864575 ~ 18864807 (+) True G62755
XR_005639511.1 lncRNA downstream 51929 19151533 ~ 19153584 (+) True LOC120560789
TU84387 lncRNA downstream 449806 19549410 ~ 19554906 (+) True G63005
TU84391 lncRNA downstream 455779 19555383 ~ 19562350 (+) True G63007
TU84393 lncRNA downstream 455779 19555383 ~ 19562350 (+) False G63007
TU84401 lncRNA downstream 475957 19575561 ~ 19581840 (+) False G63015
XM_039803826.1 mRNA upstream 6197 19076561 ~ 19081600 (+) True tmem119a
XM_039803821.1 mRNA upstream 13455 19029407 ~ 19074342 (+) True LOC120560931
XM_039803822.1 mRNA upstream 13455 19033080 ~ 19074342 (+) False LOC120560931
XM_039803823.1 mRNA upstream 13455 19033085 ~ 19074342 (+) False LOC120560931
XM_039803824.1 mRNA upstream 13455 19042109 ~ 19074342 (+) False LOC120560931
XM_039804624.1 mRNA downstream 20541 19120145 ~ 19122475 (+) True cmklr1
XM_039802722.1 mRNA downstream 108175 19207779 ~ 19226925 (+) True limk2
XM_039802029.1 mRNA downstream 151572 19251176 ~ 19255928 (+) True tctn2
XM_039803344.1 mRNA downstream 157182 19256786 ~ 19269028 (+) True atp6v0a2b
XM_039803343.1 mRNA downstream 169932 19269536 ~ 19296674 (+) True dnah10
XR_005639481.1 other upstream 406636 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 668207 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 671791 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 756567 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 1078479 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 335303 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1378208 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1378208 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1576813 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2489272 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile