RNA id: XM_039803842.1


Basic Information

Item Value
RNA id XM_039803842.1
length 1109
RNA type mRNA
GC content 0.43
exon number 4
gene id si:dkey-283b1.6
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 27962610 ~ 27966429 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggccgctgcgttgaagaataaacctctatagatgggcacctgctctaccagGTTCGTACTGTGTTTTTCTGACTCCACTTCCATTTTGGTCCATCAGGAGTTTATCAACAGAGCTTTAAGGATGCCAAGTGACTACATTCCCATTCTAGAGATCTTCATGGGCATTATGGGCTTCGGCCTCTCCATCATGTTCTGCACGACCTTCTGCAGGGCGTGCTTTCGCTTTAGAGAGGACCAGATAGAGAGGGAGGTGTGGCGACGCACTGACCAGGAGGCGCGCCCTCCTCCCATATTTTTCATCCCTTTCCATGGAAGTTTGTCACGCCAGGACAGCGAAGACCAAACCAGGATGCCTCACTACAGCCAGGAGCTCCCCACACCACCACAATATAGCAATGATGTATACTGTGGGCCACCACCATCCTATAATGAGCTGGAATTGAAGCCTGAGGATCTTCCCCCTGTGTACACAGAGTATAATGTCCCTGTGTATCCTCCATCTCACACAGACATGgttcatccacacacacagtcataacaATAAGCCAGGACCGTCACACTGCCTGTGTGGAAGTTATGGACACTCTTGATTATTGAGCTGCCTCATGGGCTTGAGTGAACTGGCACTGTTGTTTATAATGtttcaaagattatttttattttattatcaagcttgtttattttattgtgaTAATGAATGCGATGATGGCACAGAGGGGATAAAAgctgcagaaatatgaaatggCATCAGGTTTAAAGCTACAACACCTGGAGTATACAGCACATTCTCTGAGCCACTAAAACACTTAGaaatagaaatatattttatttgactCTGTATGGTGATTGATAAAATGGGATATGTGCTCATCATTTTCCTACCTGAAATTATCTCCAACAAAGAGGTTTTTCTTCTGGTTTGTTTGCATGTCTGTCTGATGTCAAAATCATGTTAAAGGTATTAATGAAATGAATGTGAATTGAAATGGGAAGGTGAATCCAATGGTGCCACTATGTGGCcttttataaagcactttgtcGTGGCTCATGCCTCCTGAATCATGAGGAGTGGGTGCAGAATTTCCATTAAAAGTTTTCTCACCACTTTT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04142 Lysosome
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87374 lncRNA upstream 58713 27903075 ~ 27904933 (+) True G65272
TU87249 lncRNA upstream 486680 27476748 ~ 27476966 (+) True G65171
TU87150 lncRNA upstream 573784 27389457 ~ 27389862 (+) True G65108
TU87147 lncRNA upstream 584431 27378998 ~ 27379215 (+) True G65106
TU87122 lncRNA upstream 592687 27299932 ~ 27370959 (+) False G65084
TU87444 lncRNA downstream 36110 28002539 ~ 28005121 (+) True G65314
TU87497 lncRNA downstream 405027 28371456 ~ 28371841 (+) True G65362
TU87515 lncRNA downstream 496196 28462625 ~ 28463104 (+) True G65378
TU87522 lncRNA downstream 654656 28621085 ~ 28621299 (+) True G65385
TU87531 lncRNA downstream 789436 28755865 ~ 28756193 (+) True G65394
XM_039803840.1 mRNA upstream 6213 27941339 ~ 27957433 (+) True erap1b
XM_039802608.1 mRNA upstream 39424 27875794 ~ 27924222 (+) False LOC120560289
XM_039802609.1 mRNA upstream 39424 27909068 ~ 27924222 (+) True LOC120560289
XM_039802054.1 mRNA upstream 88690 27864528 ~ 27874956 (+) True cenatac
XM_039804004.1 mRNA upstream 258023 27688436 ~ 27705623 (+) True tars1
XM_039802373.1 mRNA downstream 19694 27986123 ~ 28001022 (+) False si:dkey-164f24.2
XM_039802371.1 mRNA downstream 19695 27986124 ~ 28001022 (+) True si:dkey-164f24.2
XM_039802372.1 mRNA downstream 19696 27986125 ~ 28001022 (+) False si:dkey-164f24.2
XM_039803263.1 mRNA downstream 68350 28034779 ~ 28078903 (+) True aacs
XM_039803645.1 mRNA downstream 151485 28117914 ~ 28422043 (+) True si:dkey-215k6.1
TU87117 other upstream 661876 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 1305677 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 1321165 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 1467318 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 1383695 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 2220419 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 2280458 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 2281510 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 2281554 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile