RNA id: XM_039803851.1


Basic Information

Item Value
RNA id XM_039803851.1
length 2746
RNA type mRNA
GC content 0.45
exon number 8
gene id si:dkey-91m11.5
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7766806 ~ 7820472 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatttcTCTAGCACTAATCAGTTATTGGGCCGAGAGGCCCGTGTTTAGGCTACCTGAAACTGTAGTTTACCAACTCTTCGCAGCAGCAGGCATGAGCACGTTGGTAAGCAGGGTAGGAGGGGATTCTCTGGAGTTAATCCCCCAAATCCATCTGGGAAGTAGAACAACACAAGGCAAGCGTGGTCTGGCGGGCTTGCGTGGCTTTGTTCCTTTTCTGACTCTCACTGGAATGAAAGGGACTTGGAGCGTAACAATGCTGAGACGTTAAGAGGacagaaagtttttgtaaagATTCAGCTGGGCGGCATTCAAGAAGATAATCTCCATTCTGCAAGGTGAAGTGATCGGTGGCTCAGGGAAGAAGAACCCGCTGCTCTCGTTAGTGCCTCTGAGGTTTAGACAACAGCGCtggtttctttgtttgtttaccATTAGTCAGTGAAAGTAACATTTAAGAGTAGAGAAAGGCTCATGCCAGAAAGAATGAGTGAGAGTAATCCTAATGAGGAGGAGAGTGTGGATCAGGCTGGCAGCGGtgtagaggaagagggagacacGGCCACAAGGAAAGTCCCGGGTACAGGGGCCCGTCTGTGGGAGCGAGTCCGCAGCAGTCTGATCAAACCAAAGctgGATCCTCAGACATTGCAAAATAAAGACTGGCAGAGGACCGTCATCGCCATGAATGGGATCGAGGTGAAGCTTTCGATGAAGTTCACCAGCCGAGAGTTCAGTCTGAAGCGGATGCCTTCACGGAAACAGTCCGGCGTCTTTGGAGTGAAGATCAACGTAGTAACTAAGCGAGAACGCTCCAAGGTTCCCCTCATTGTGAGACAGTGCGTGGAGGAAATTGAGCGACGAGGGATGGACGAGGTGGGAATCTACAGAGTGTCTGGCGTCGCAACTGATATCCAGGCACTGAAGGCTGCCTTTGATTCAAACAACAGAGACGTGTCTGTCATGATGAGTGAGATGGACGTAAACGCCATCGCTGGAACACTGAAGCTGTATTTCCGCGAGCTGCCCGAGCCTCTTTTCACTGATGAGTTGTACCCCAACTTTGCTGGAGGCATCGCTCTCTCTGACAGTGTGGCCAAGGAGAGCTGCATGCTCAACCTGTTGCTGTCTCTACCAGAGCCCAATCTGGTCACCTTCGTCTTCCTGCTCGACCACCTTAAAAGGGTGGCTGAAAATGAGAGCATCAACAAGATGTCTCTGCACAATCTGGCCACCGTTTTTGGTCCCACTTTGCTGCGGCCCTCTGAAAAAGACAGCAAAATCTCAAACAGCTCGCAGCCAATCTCCATGAACGACAGCTGGTCTCTAGAGGTCATGTCTCAGGTGCAAGTCCTTCTCTACTTCCTTCAGCTGGAGAGCATTCCAACACCTGACAGCAAACGTCAAAGCCTTCTCTTCACTACCGAAGTATAGCAGGAACATCATGCACTTGTCTGTAATTGTTCTGTTCAGAGGCAGAATGTCTGCTGCCTAATGAGGTGGATGCTGCTGAGCAGCCATGACTCTGAGGATGCTTTATTTAGCCACTAGGTGGAACCATCAACGCATTGTAAACTGTAAACAGCCCCCATGCCCAAAGCCATTCCTTTTGGAGATGTGATGAGCACGTGTGTTCTGTGTATTTACAAGCTTGCCTGCTGTGTCAGTAAAAGACATACCATTATGATGtatagacatttttttaaatttaatttaaatatcaaGGAGCGTTATTTACTGTACTTTGATATTTTACACTGCCCTGTTCTGTCACTGTGCACATTAGCTCCATATTCACAGACAGGGGTTTCTGCTGTATTTGGATTTTGTAAGATGTATTTCTGTGAATGGATAATAGTTGAATGGTTGGATGAATGGACATATGTTTTTCATGGCTATACATGTTTGTTTCCCCCCCAGAAACGTTTGTCTTGGTTGAGAGCTCACCTGTGCCTATGTTTCCTTGCTGACGATGACCAATAGAACATTTCAGTTACCCTCATGTTTACACACACTCTTCATTTTGTACAGAATTTAAAAAGTATGAGACTGAAAACTGTAGTTTACACACAGCAACATGCAGGCATGTTGACCTAACCATTTGAAGTGTGTGCTATCTGTGCTATACAATTTGTATGGTTCTTCTGGTGGTGTCCGAGCCAACGTTCATGTAGATatgagtgctttttttttttggaagtggTACAGAGAAGTGAAAGGCAAATCATTCCAGGAAAAGGCGAGGCCTAATCCTTCCACCCATGGAATGTATACTGTGCTGTGTAGAATTTTAAATCACAGTTGTCTTTTGTCCATATTTCATATGTTTTGTgtccatattgttgttgttttttctgttgaTGTTATTGCTTCCGGCATTCCTTTTCTTTAGTCTACCTATATAGGACAAAACCACACTGCTGTAGAAATGAGAGCACCATCTCAAATACCAAATGTTGCCTAGTGGGGCCCTGGAAGCATAGTGATTCACCCATATCCAAGTCTCCTGGCTTATTCATACGTTTATCATCCACATAGCTAGTATTACTTACTGAAAATATACTGTTCTTtgcattaatattttttttctcccaaatCACTACAAGTATTCAAACACTTGTTAGCACAAACTATAACCCTACAGGCTTGTGATTTATGTAAAATAAGCAATAACTCTTAGTGATTCTTAGGATGAGACTAGTGGGGAGTGTATGTATgatttatgtaaataaaaaaattggtaACATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80467 lncRNA downstream 27230 7727777 ~ 7739576 (-) False specc1la
TU80413 lncRNA downstream 149671 7610429 ~ 7617135 (-) False G59875
TU80414 lncRNA downstream 151912 7610429 ~ 7614894 (-) True G59875
TU80418 lncRNA downstream 190231 7576229 ~ 7576575 (-) True G59878
TU80415 lncRNA downstream 191276 7574720 ~ 7575530 (-) True G59876
TU80515 lncRNA upstream 50315 7827141 ~ 7877205 (-) True G59951
TU80534 lncRNA upstream 125405 7902231 ~ 7902539 (-) True G59970
TU80536 lncRNA upstream 126867 7903693 ~ 7903912 (-) True G59972
TU80643 lncRNA upstream 393559 8170385 ~ 8170606 (-) True G60064
TU80651 lncRNA upstream 424210 8201036 ~ 8201375 (-) True G60072
XM_039803848.1 mRNA downstream 794 7727560 ~ 7766012 (-) False specc1la
XM_039803847.1 mRNA downstream 7518 7727560 ~ 7759288 (-) False specc1la
XM_039803846.1 mRNA downstream 7519 7727560 ~ 7759287 (-) False specc1la
XM_039803845.1 mRNA downstream 7519 7727560 ~ 7759287 (-) True specc1la
XM_039803844.1 mRNA downstream 39746 7710144 ~ 7727060 (-) True adora2aa
XM_039803054.1 mRNA upstream 100573 7877399 ~ 7887425 (-) True anapc7
XM_039803273.1 mRNA upstream 138031 7914857 ~ 7924566 (-) True pptc7a
XM_039803272.1 mRNA upstream 148107 7924933 ~ 7930884 (-) True ppp1cc
XM_039802093.1 mRNA upstream 156145 7932971 ~ 7939104 (-) False myl2b
XM_039802092.1 mRNA upstream 156145 7932971 ~ 7939069 (-) True myl2b
TU80421 other downstream 182287 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_243 other downstream 255515 7511221 ~ 7511291 (-) True trnag-ccc
TU80230 other downstream 769950 6991203 ~ 6996856 (-) True G59739
TU80011 other downstream 1243132 6522759 ~ 6523674 (-) True G59563
TU79961 other downstream 1339995 6426250 ~ 6426811 (-) False G59521
TU80531 other upstream 102598 7879424 ~ 7887403 (-) False anapc7
TU80745 other upstream 624196 8401022 ~ 8402566 (-) True G60145
TU81433 other upstream 3412316 11189142 ~ 11189741 (-) True G60715
TU82089 other upstream 5812213 13589039 ~ 13589332 (-) True G61264
unassigned_transcript_252 other upstream 7162149 14938975 ~ 14939047 (-) True trnaa-agc_14

Expression Profile