RNA id: XM_039803872.1


Basic Information

Item Value
RNA id XM_039803872.1
length 5300
RNA type mRNA
GC content 0.45
exon number 21
gene id sgsm1a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18924315 ~ 18952142 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCCTTGCTTCTTTGTTAGGGTGGATCAAAAGGGAGCCCATCTGACGCCTATTATGTTGGACCTTGTGCTTTGGAGTACACTAAGATGAAGACAGCAGACCACTTCTGGACAGACCCGTCTGCTGACGAGTTGGTGCAAAGACATCGCATCCATGGGGGCCACTGCAGACAGGATTCTCCCACTAAGAGGCCTGCACTGTGTATCCAGAAGCGGCACTCCAGCAGCAGCATGGATGAACGCCCTTCCCCCTCACCATCAGCTCGTGAATATGTGGAGTCGCTGCATCAAAACAGCAGGGTGACCCTACTGTTTGGCAAAAACAATGTGCTTGTACAACCGAGGGACGACATGGAGGCTATCCCAGGTTACCTGTCTCTGCACCAGAATGCTGATCTCATGACCCTGAAATGGACACCGAACCAGCTCATGAATGGCTCTGTTGGAGACTTGGACTACGAACGCAGTGTATACTGGGACTATGCCATGACGATCCCTCTAGGGGAAATAGTTTACTTGCACTGTCATCAACAAGTTGACAGTGGGGGGACGGTGGTGCTGGTCAGTCAGGATGGGATCCAAAGACCTCCACTTCGCTTCCCCAGAGGAGGCCACTTGCTCCAGTTCCTCTCCTGCCTGGAGAACGGCCTGCTTCCCCACGGCCTGCTGGACCCTCCACTCTGGTCCCAGAGGGGAAAGGGGAAGGTGTTTCCCAAGCTGCGGAACAGGGTTCCTCAGGGATCTGGATCCTCAGACTCGGTCTCAGATAAGGAGGAGGACGAGGCCACAGACTATGTCTTCCGCATCCTCTTTCCAAACAGCCAGTCAGAGTTTGTGAGTCCTCCAGACTTGATGGATCAGGGAGCTACAATGTGGCATCCCACTCTCAGGAAGTCCTCGTGTTCCTCTTGTTCTCCGGGGAGCTTCTCTGATGGGGCGATGCCCAAGGGGTGCAACCATGAGAGGGCTCCTCTGAAGCTGCTGTGCGACAACATGAAGAATCAGATCATCTCTCGGGCTTTTTATGGCTGGTTAGCATACTGCCGTCACCTGTCCACTGTGCGTACACACCTGTCTGCTCTCGTCAATCACGCCATTGTGGCGCCCGACGTGCCTCGTGATGCCTGCAAAGGACTCACCACAGACGTGTGGCAGGCGTTTCTCCAGGACTGCACAGCATACGAGGAGAAGGAGCTGCTTCGTCTGGTCTACTTCGGTGGCGTGGACGCCTCGCTGCGTAAAGAGGTGTGGCCTTTCCTGCTGGGTCATTACCAGTTTGGAATGTCAGAAGCTGAGAGAAAGGAGGTGGATGAACAGGTCCGAGTGTTCTACCACCAGACCATGCGTGAGTGGCTCGGCTGCGAGGAGATTGTGCGCCAGCGGGAGAAGGAGCAGCATGCTGCAGCATTAGCGAAGTGTTCCTCTGGAGCGAGCATGGACAGCTCCAGTCAGAAGATGATCCACCACAACTCCACTGTCAGCAATGAGTCCCAGTCCCCCCAGAGCTCAGACAGGCAGAGTCTGGCTCGCCTGCAGAGTGactccagcagcagcacacaGTTCTTCACATCTTCCCATCCCTTCCCCTGGAGTAGCCTGCTTCCCTTTGGCTTGTTCTTTCAGGTGTTTGAGTCCGTAGAGGAGGTTGACCAAATCGAGACAGAGCCCAAGAGCGAAGAGGCCAAAGCGGTGCCAAAGATACCCAATGGAGCTCTGCAGAACGGGACAAGCTCTCCTGACTCCGGACATCCCTCCTCCCGTAACTTCTCAGTCACCTCCGGCCTGTCGGACGGCTCACTCACAGAGGACAGCGCTGCACCTGATACAATCCTGAGATCTGCAGCTGTCCCTCAGGCACCACAGAGCCCAGTCAAACCTGCAGGGGTAGAGAGTGAAGGTCTGACAGGGGAGATGGACGGCCAGGTGAAAGGTAAAGTTAAGAacaaggagggggaggaggaagaagaagaggaggaggagaaagcaCCTGATGTGACCAAAACTGCAGAAAATACCAAGACTGAGGGGCTGGTGAAGGCCAACAAAGACACAGGTCTGCAACCCAAAACACAAGAAGCAGTTGAGGAGTCTGGAGCAATTAAAAAAGAGGGGCCCAAGTGTGTAGATGAAGATGCACTGGCAGACATTAAAGGAATGGAACCTTTAGAGTCAGGGGTAATAGAAAAGCAAGTGCCCGATGAGGATACTATGATGGTATTAGAAGCTTCTGCTGCAAAATCAAAAGGAGAACTTGTTGAGCAAAGTCTTAAAAAAGAAGTAGAAGTGAGTATTGCGGAAACATCAATGCTTAAGAAAACAGAACCAAATGTGGAAAAGACAAAGGAAATGAATGAATCAGAGACAAGTAAAGCGCAAGAGGTTTTATTggcagaaaggagagaaaatatATCCGTTGATCCTGTGGCTCCCAAAGTTGAAAAGAACCTGGTTTTCTCAGGCAGACGCTCGTCTCAGACAGATGAGGACCAGGTCATGACTGAATCCGATGAGTCTCCCTCAGCCATAAAGATGGAGGACATCCCCAAAGCCAAAGTTTCCATGATGCCTTGGAGCAGGAAGGGACGATGTGAAGCGTTGTCTTTCGACGAGCAGGGAGAGCCCTGTCCGGAGGGCACAGAGCCCATCCTGTGTGAGGAGCCAGAGATGGAGAGTCTTTACCCTAACTTTGACTCTCTGGTGAGGTCTGAAGACATTAAGAATGAAGCAACCTCTCAAGAATCTGCTGGGAGTACCTTCTCTcaAGAGCTTTTGGACTTGTATACATTAAATCTGCATCGCATCGAAAAGGATGTCCAGCGCTGTGACCGGAACTATTGGTACTTCACTCCTGCCAACCTGGAGAAACTGCGCAACATCATGTGCAGCTATATCTGGAGGCACCTTGACATCGGTTACGTACAGGGCATGTGTGATCTTCTGGCTCCACTTCTAGTCATTCTGGATGATGAGGCCATGGCCTTCAGCTGTTTCACTGAGCTCATGAAGAGAATGAATCAAAACTTTCCACACGGAGGAGCTATGGATACTCACTTTGCCAACATGCGCTCTCTAATCCAGATCCTGGATTCTGAGCTGTTTGAGCTAATGCACCAGAACGGAGACTACACCCACTTCTACTTCTGCTACCGCTGGTTTCTCCTAGACTTCAAGCGAGAGCTGGTGTATGATGACGTGTTTGCAGTGTGGGAAACGATCTGGGCAGCCAAGTATGTCTCTTCTAGTCACTTTGTCCTCTTCATTGCCCTGGCACTGGTGGAGATCTACAGGGATATAATCCTGGAGAACAACATGGACTTCACTGACATCATTAAGTTCTTcaatgaAATGGCTGAGCACCACAACATAAAGAAGATTTTGACCATGGCCAGAGATCTGGTGTGCAAGGTGCAGATCCTGATAGAGAACAAGTGATTGTCctctttgtcttctttttccTTCCAAGTAAAGTGTGACCGGCTGTAGCAGCACAAGAGTAAATTACatctgagcacacacacactctctctctctctctctctctctctctctctctctctctctcactgtcactctcactctctctcacacacacacacacacacacattacacaaagCCTTTACAATCACAGTTTGCTGCTATGAGCCGTATTGACTGTATCCacaatgttgtttgtgttgtcaacAGGTGTATGAGAATATTATGCTTAATATTTGTCAGTAtgttaaagtaaaaacaaatgtatcagaaaaaaagcatttcttTAATTTCTAGATATTTTTGCCAGAAATCCCTTAAGTGTCGGTTTTAACCAGAGTGCACTTAATATTTTTGAGATAATGATGGTTTAAGttgcacatttcaaaccaaactgcaGAGCTGAATTCCACCAGAGACTATATTTATGAGAGAGAAAAATACATTGTGATAATAGTTTATAATAGTTATTTTAATAGTCAAAGTCTACACAATTAAACTTTAAACATATCAGCAGGTTATCCCCCTATTCCTACCCCTTAATGAAGGTAAGAATGTCAGCAGAATTTACTTTAATTACAACACCCCAaaaattaaattactttttactGATGGAGAACACTGGCTTGTAGTCCGGAATGTAACTCCAGTTCTCTTTAACACACAACATTAAGAATAATTTAGCTTTTAGCACCATGTCAGTGATTTAGCATCCAacagtgtttttaatgttttaattgaaCTGCCTTGTCTGCCAAATATTGTCTTCATTTGTTATGTGTGAATTGTGAGTTGTACTgagagaaaaatgtgtttaactTATGAGGATTATATTATGTAAAATCATAACCTAATATTTAAGTGACTTACGGATGTCTGGGTCCTGTTTGTTGAATTAAGACAGCTTGAATATGATTATGAATTGGGAAGATCAGATGACAcagtaaaaacaacatttagTCACAGTGaccaaataaaatgttttgtgtgGCCACGTTATTCAGAGTTGTTACTGTGAGAATGACTTAAACAGAAAgatgaaaattaaaatgatgTTATGAGGGaaactgtatttatgttttggCAGATTTGGGGCTTGTGAGgacatacaatatatatgcTTTTTATCCCTAAATTAATACTAAAGTTGGCCCTCGGTTACCGATATTCAAGCTTGTCAATCATTGCCTAAAACTTCACTCAGTTGGTCTTCAAGTGTTGTTTCATGAATGTGATAAGATAAATTGCTTTTAATATTGGTGTTTCTTTGTGAATGCTAACTGCTGtcagaaaacctttttttttttttttttattgtaacatttatttagtattttatttatttatttattcattcattcattttctcattcagatgctgctttgtttgtaaagctgatattttttattttgtgtccaGTTCTAAATGTGTATTGTGAAACAATCAAATGATATACTAAGAgttcatatacatatatatctatattaaaTGGTATATGTTcttataataaaacaataaaaatggaaTCATCATTATTTTTCCAAAACATCTTGTAATGTGTATTTTACTCAATTTAATAAGGTGAGAGAGtcagaaatactgtatatcataaAGGTAGAGGGTTGATAAAACATCAAGATGGCAATGTCAGTCCATCAGTCCACCTCTTTAGACAAGGCgtaaatatctcaacatctattgGGTGGATTGCCGTGAAATTTTGTTCAGATGAATTCTGACTTTAGTGATAACTATGGGATGGATTTTCATGAATGTTTCTTATATTTTATCctaaactgtaaataaaagtTTGTATTTAAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84019 lncRNA upstream 73245 18864575 ~ 18864807 (+) True G62755
TU84005 lncRNA upstream 164944 18772755 ~ 18773108 (+) True G62741
TU83993 lncRNA upstream 189556 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA upstream 189900 18747490 ~ 18748152 (+) False G62732
TU83952 lncRNA upstream 195654 18737554 ~ 18742398 (+) False mvk
TU84099 lncRNA downstream 13941 18966083 ~ 18982623 (+) True G62796
TU84163 lncRNA downstream 128938 19081080 ~ 19081654 (+) False tmem119a
TU84161 lncRNA downstream 132792 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA downstream 133772 19085914 ~ 19086862 (+) False G62836
XR_005639511.1 lncRNA downstream 199391 19151533 ~ 19153584 (+) True LOC120560789
XM_039802369.1 mRNA upstream 33279 18896623 ~ 18904773 (+) True ankrd13a
XM_039802370.1 mRNA upstream 59962 18872282 ~ 18878090 (+) True LOC120560157
XM_039803256.1 mRNA upstream 96850 18794250 ~ 18841202 (+) True fam222a
XM_039803155.1 mRNA upstream 195653 18737518 ~ 18742399 (+) True mvk
XM_039802312.1 mRNA upstream 201577 18732155 ~ 18736475 (+) False aldh3b2
XM_039803883.1 mRNA downstream 1682 18953824 ~ 18961484 (+) True gatc
XM_039803882.1 mRNA downstream 1683 18953825 ~ 18957341 (+) False gatc
XM_039803884.1 mRNA downstream 5864 18958006 ~ 18958978 (+) True LOC120560962
XM_039803885.1 mRNA downstream 9695 18961837 ~ 18962808 (+) True LOC120560963
XM_039803562.1 mRNA downstream 18142 18970284 ~ 18973314 (+) False alkbh2
XR_005639481.1 other upstream 256891 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 518462 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 522046 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 606822 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 928734 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 482765 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1525670 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1525670 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1724275 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2636734 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile