RNA id: XM_039803882.1


Basic Information

Item Value
RNA id XM_039803882.1
length 795
RNA type mRNA
GC content 0.46
exon number 5
gene id gatc
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18953824 ~ 18961484 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTCACGTTCCCTTCGTCCTACTTCCCCCCTGGGCTAACTACGGAAAGTCGTTCGGTTCGCTATATGCATGCTAGTTAGCACTGACCATGCTGgtgaattattattaaatactaAGTAAATGTGACACCATTTTTATACAATACGGGGATAGCTGAATACCTAATTGTcttaaaatgtcagtgtttaGTCTCGCTGCTAAACGCACATGCCGTGGCGTGTCGTGCCTGAAAATCACTCGATACTGCCTAACAAACGTGGAGAACTtccacagaagaagaaacagcTGCCTGGAGAGCCACATCACAAATGTAACGCGTCTGTTTAGCTCTCATCCACATAACTCCAAGGTACCAGAGGTTGCAACATGGGAACCAGTaccagaggaccaacttccccCGCCTGCCCATATTCCTACTGACCTGGTGGACAAACTGGAGCGACTGGCCTTGGTTGATTTCCGCACCAAACAGGGACTGTTCTGTTTGGAGAAAGCTATACGATTTGCAGATCAGCTTCATGTTGTTGACACGTCAGGTGTTGAACCAATGGATTCAGTTCTGGAGGACAGggcattAAACCTGAGAGACGATGCAGTGATGGAAGGGGACTGTGCTGAAGAATTGCTTCAGCTCTCCAAAAACACAGCTGAAGAATATTTTGTGGCACCACCAGGAAACATTCCGCTAccaaagagggaggagagggcaGCCTTGCTGAAACATTCAGAGTTGTGATATTTATTGCTATTTTTTCATTTGTGTAAAATTAAAAACCTGCTGGTCATGCATTtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84019 lncRNA upstream 89018 18864575 ~ 18864807 (+) True G62755
TU84005 lncRNA upstream 180717 18772755 ~ 18773108 (+) True G62741
TU83993 lncRNA upstream 205329 18747490 ~ 18748496 (+) True G62732
TU83994 lncRNA upstream 205673 18747490 ~ 18748152 (+) False G62732
TU83952 lncRNA upstream 211427 18737554 ~ 18742398 (+) False mvk
TU84099 lncRNA downstream 8742 18966083 ~ 18982623 (+) True G62796
TU84163 lncRNA downstream 123739 19081080 ~ 19081654 (+) False tmem119a
TU84161 lncRNA downstream 127593 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA downstream 128573 19085914 ~ 19086862 (+) False G62836
XR_005639511.1 lncRNA downstream 194192 19151533 ~ 19153584 (+) True LOC120560789
XM_039803869.1 mRNA upstream 1683 18924315 ~ 18952142 (+) True sgsm1a
XM_039803870.1 mRNA upstream 1683 18924315 ~ 18952142 (+) False sgsm1a
XM_039803872.1 mRNA upstream 1683 18938052 ~ 18952142 (+) False sgsm1a
XM_039803871.1 mRNA upstream 5024 18924315 ~ 18948801 (+) False sgsm1a
XM_039802369.1 mRNA upstream 49052 18896623 ~ 18904773 (+) True ankrd13a
XM_039803884.1 mRNA downstream 665 18958006 ~ 18958978 (+) True LOC120560962
XM_039803885.1 mRNA downstream 4496 18961837 ~ 18962808 (+) True LOC120560963
XM_039803562.1 mRNA downstream 12943 18970284 ~ 18973314 (+) False alkbh2
XM_039803563.1 mRNA downstream 13150 18970491 ~ 18973314 (+) True alkbh2
XM_039803561.1 mRNA downstream 13554 18970895 ~ 18973314 (+) False alkbh2
XR_005639481.1 other upstream 272664 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 534235 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 537819 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 622595 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 944507 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 477566 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1520471 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1520471 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1719076 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2631535 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile