RNA id: XM_039803889.1


Basic Information

Item Value
RNA id XM_039803889.1
length 3095
RNA type mRNA
GC content 0.44
exon number 14
gene id zcchc8
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20076882 ~ 20082990 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAGTTGCTTTCGTTAGTAGCTGGGTAAAAATGGCTGAAGTTGATTTCGGCGATTGTGAGCTCTTTCAGCTGCTTGATGATTCCGCACCGGTCCCGACGCATATTCGCTTCACAGATGATgaggaggacaaggaggagACGAGCCAGGTCCGGAGCAGACTGGAGGAGTATGATGACTACATTCAGAGACTCACCGAGGAGAATAAAGGTTTAAGAAGAAAACTGAAAATCCTGACACGACCAAGCGGCATCACAATAGAAGATGTCAACATCGACGGGCCAGCTCTTCAAATCCTTTATGCAAACAATATTATTTCAAAGCAGTGTCGTCAAGAAATTGAAGATTGCATCTGCAATGTGATTTTGAAGCACCAGAAACCGagcaatgaaaagaaaaactccaTCTTGCAAATGAAACCTCAGAATTCAGCTTTTGCTTTGGATGAAGATCTGCATAAGTCCTCTTCCAGTAGCGTAAAAACAACAACCGAAGCGTTTAAAGTGGTTGGAAGTGTCTTATATTTCACTACATTTAGTGTTGATAAACTTGGACAGCCTCTGGTGAATGAAAACCCCCAGCTGACAGATGGATGGGACGTTCCAACATATCACCAGGTTTTTAACCAAGTCGTTGGCACAGATGGACAGGATATAgaaatgaaagacaaaagACCCAAATCAATGTGTTTCAACTGTGGTTTGAGTGGTCATCAGCTGAGAGACTGTCCCAAGCCTAAAGACATGGCTGCAATTAatgagagaaggaaggagtttAATCAGAACAACAACCAGGCCATGCAGAGTAACCAGCGATACCATGCTGATGAAGTGGAGGAGCGGTTTGCTAAATACAAGCCTGGAGTCATGAGTGAGGATCTGTTGACAGCGCTGGGAATTGATGGAAACACCCTCCCACCTCTAATTTATCGCATGAGGCAGTTAGGCTATCCACCAGGTTGGCTCAAAGAGGCAGAGATGGAAAACTCTGGCTTAACAATGTATGATGGAAATGtTTCAAATGATGGTAAAATAACAGACGATACCAATTCGCAAAACATCTCTTATGATGTTTCCAAACTGGTAGATTTCCCAGGCTTCAATGTAACTGCATCACACAACGTGAAAGATGAGTTCATGCAGTATGGTTCTATTCCAATGCAGACCAACCACATGAAGCAAAACTATGCAGCTTATCTGTCCAACAACTTCCCTATGCCTGGTGCCACCTGCAACAAGAGACGGCATGAATCTGAATCATCTCCACAGCAAAGGAAGAAGACGAGGTCCAGTCCGGATCGAAACTCTGATAGAAGCTCGGACATGGATATTGAATCAGACCCAGGAACACCTTATAATCATGGCCTGGGTGACTTCCAGTTCCAACCTCCGATGCCCCCTGGCTCCCCATGCTTTAGTTCACCGCCTCCTTTACCCCAGGGCACTCCTCCTGCTACACCCACTCCCCCACCTCTCCCTAAAGGTACTCCTCCTCCCACACCCACCAACGGCTCTCCAGCTCTGCGGGGGAGTAACTGGGTAGTAGTTGATGAAACTGTGGACGGAACAGAGGATGAATTGTCATTGGAGGAACTGGAGGAGCAGCAGAGGCTGATTTGGGCAGCTCTAGAAAATGCTGACACTGCCACGAATAGCGAATCTGAGACACCTGCAGTGGGAACACCTGTACCCAGTTCAGACACAGAAACGGAGGAGGTTGAAGAAAcgatggacaaaacaagacctgCAGAAACTTGCCATAGCAGTGAAAATAAAAGTGAACCAGGGGTTCAAGAGATTTGCTCTCAGAGCCCTGGTCTAATCAAAGCCCCAGACGACAGCCCCCAGAGCCCTGGTCCGGTCAAAGCCCCAGACGACAGCCCCCAGAGCCCTGGTCCGGTCAAAGCCCCAGACGACAGCCCCCAGAGCCCTGGTCCGGTCAAAGCCCCAGACGACAGCCCCCAGAGCCCTTGTCCGGTCAAAACCCGAGACGACAGCCCCCAGAGCCCTGGTCCAATCAAACGTCAGGAAGGTAACCCCCAGAGCCCTGATCTAGATTTCTCTAATGGAGCAGCTGGAGATTGTGCTTCTCCTACGCATGACGAGAAGATAACCGCTGTTCCTCATCGTAGCAGGTTTGCAGCTGGCATCGTTCCGTTTGAAGATACACCAGAGTACACTGAAGTTGCTGAAGCCACAGGGACATACCTTAGGATCAGAGACTTGCTTAAAAGTTCCCCTCGAagtttagcaaaaaaaaaataactgtacGGTCTTCATTTGGAACACAAGGGTacattgatattttttaaacaaacttcTATTTTCATGACCATCCTATCAGGCATGTTTTagctgtttattttttgtaccaAATTGAATGTCTATGCTGTGTATATACATTTGATCTGTAAACAAGGAGGGACATCAAGGGATGTTGCAACAACAGTAGTTTTTAAGTTTTGACCAATACGTCTAAGTTTTTTGTAACAGTTATGTTACTCATgctgtttattttattgtaaaatttgtGAAATGGTCATTTTTTGACCTGTAAAAAATTTTAATACCATGATGTTAAAATGaccttttctatttttgttcTACTTAAATTGCTTAAAACCCTTAAGTAAACATGCTTTCACTTGCttcagtgcttttattttgtctggCAGCCATGGATAGATGTTGGTTTGATTTCATTTTGCTGTATGTTGTACACAGATGGTGTAGTTGATTGTTTAACCATCTTTAGCAGAGTTTAGTGAATAAATTGGTCAATTTGTTCACTAAACTCTGCTAAAGATGCTACCTTCTTTCTAAAATCAGCTCCTTGCTGATGTAATGCACATTGGCAATCAAATTGCATGTAATTGGAACTACACTACAACAATGTGTATTTTTGTCCCTGGGACATTATAAACCTTGGTCTACATTTTGTCTATATCACAGCTGAAATAAAGTTAATTGTCCCATTTCACGCTCATCTGCAagcaaaaaaacatcaaactgCTTTAAAGAAGCTATAGAGGCTAGATATGCACTGAAGTGTCAATCATGGTTAGGCATTTAATAAAATGGTTACCTGTTGTGTGTTA

Function

GO: NA

KEGG:

id description
K13128 ZCCHC8; zinc finger CCHC domain-containing protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84680 lncRNA upstream 49716 20026910 ~ 20027166 (+) True G63204
TU84679 lncRNA upstream 50127 20025755 ~ 20026755 (+) True G63203
TU84678 lncRNA upstream 51134 20024913 ~ 20025748 (+) True G63202
TU84668 lncRNA upstream 58470 20018117 ~ 20018412 (+) True G63192
TU84666 lncRNA upstream 60221 20016232 ~ 20016661 (+) True G63190
TU84965 lncRNA downstream 309417 20392407 ~ 20392631 (+) True G63385
TU84955 lncRNA downstream 358721 20441711 ~ 20442055 (+) False vps13a
TU84956 lncRNA downstream 359164 20442154 ~ 20442952 (+) True G63377
XR_005639468.1 lncRNA downstream 475350 20558340 ~ 20564445 (+) True LOC120560275
TU85049 lncRNA downstream 482678 20565668 ~ 20566142 (+) True G63451
XM_039803891.1 mRNA upstream 2618 20067457 ~ 20074264 (+) True rsrc2
XM_039803892.1 mRNA upstream 2618 20067458 ~ 20074264 (+) False rsrc2
XM_039803918.1 mRNA upstream 42785 20031875 ~ 20034097 (+) True LOC120560988
XM_039803917.1 mRNA upstream 72987 20001950 ~ 20003895 (+) True LOC120560984
XM_039803916.1 mRNA upstream 91914 19983835 ~ 19984968 (+) True LOC120560983
XM_039803897.1 mRNA downstream 923 20083913 ~ 20109984 (+) False clip1a
XM_039803894.1 mRNA downstream 924 20083914 ~ 20109984 (+) True clip1a
XM_039803898.1 mRNA downstream 924 20083914 ~ 20109984 (+) False clip1a
XM_039803899.1 mRNA downstream 924 20083914 ~ 20109984 (+) False clip1a
XM_039803903.1 mRNA downstream 924 20083914 ~ 20109984 (+) False clip1a
TU84360 other upstream 627932 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1395721 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1657292 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1660876 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1745652 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 394822 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 394822 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 593427 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1505886 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2846909 22929899 ~ 22930205 (+) True G63905

Expression Profile