RNA id: XM_039803902.1


Basic Information

Item Value
RNA id XM_039803902.1
length 4968
RNA type mRNA
GC content 0.50
exon number 28
gene id clip1a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 20083913 ~ 20109984 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAAGTTGACGTTTCCCTCGAACGTTGGACAGACAGCTCGTACACTGGGCTGTGCCTACCAGTGTCTGATCCGAGTCGTCGTGGTTCcccatttagctagctagtagctgtgtgtttttttttactgagaaGACGTAGGCTGTACAGAAACATATCAGGGTCATTTTTGTGGGCAGCACTTTTTCTCCCTTCTCctggtttttctttttgtttgacattttttgtttgtttaaatttttttgtttaagtttggtgaggagaaagaaactTTGCCATCACAGAGCTGCAACCTGTTGTTTTGATGGTCTGGGGTCAGTCTGTACCCACCGACGGACACAAGCCTTTTGGGTCTAACGGATCACTGGAGGAAACATGAGCACAGCCAGGCCCAGTGGGATCAAAGGGCCCAGCAAGATAGCTAGGCCACCTGGGACAGCAGCCCCCAAGACCAACCCCAGCACAGCGGGAGCTAAAGCTGCTGCGGCCGACAAATCAGCTGCAAGTGCCAGTGGAGGAGATGCCGGGGAGAGTGCTGGGGAGATCTTTCAGATTGGGGAGCGAGTATGGGTAAATGGGAATAAGCCAGGCTACATACAGTTTCTGGGAGAGGCACAGTTTGCTCCAGGACAGTGGGCAGGGATTGTTCTGGATGAGCCAATTGGGAAGAATGATGGGTCGGTGGCAGGGGTGCGCTACTTCCAGTGTGAAGCCCTGCGAGGAATTTTTACCCGCCCATCCAAGTTGTCTCGCACAGAGGGGGAGGCTAACGGAACTGAGACAGCACCCCCCTCCCGTGCTGCATCACCCACTCCTTCAGTTGGCAGCGTATCCTCGCATACACCTGCCACAAAATCAACATCACCTACCACTGCAACCAAGAAGGCCTCCTCCACTGCACCAGCTACGCCAGTTACACCATCCTCCAACCTCCCACGCACAAACAGTGAATCTGTCTCCAACCTCTCTGAGACTGGGTCAGTCAAGAAGGGGGAAAGGGAGCTGAAGATGGGTGACAGAGTATTGGTTGGTGGTACAAAGGCAGGAGTGGTACGTTTCCTCGGAGAAACAGATTTTGCCAAAGGCGAGTGGTGTGGTGTGGAATTGGATGAGCCCTTAGGAAAGAATGACGGGGCAGTGGCAGGCACAAGATATTTTCAGTGCCAACCCAAGTATGGTTTATTTGCTCCAGTGCACAAAGTCACACGCATTGGCTTCCCTTCCACCACGCCAGCCAAAGCAAAAACAACGGTTCGGAAAGTAGTGGCCACACCATCAGGGCTAAAGCGAAGCCCTAGCGCCTCCTCCATCAGTACCATGAGCTCTGTGGCATCCTCTGTCAGTGCCAAGCCCAGCCGCACAGGCCTGCTAACAGAGACATCATCACGGTATAATCGTAAGATTTCAGGCACCACAGCCCTGCAGGAGGCCCTAAAGGAGAAGCAGCAGCACATTGAGCAGCTAATGGCTGAGAGGGATATGGAGAGAGCTGAAGTTGCCAAGGCCACTGGCCATGTTGGAGAGATGGAGCAAGAAATTGGCCTGCTGAGGGTTGATCAGGAGCAGATGGAGGCCAAGATGGATCAGTTGCGTGCCTTGGTAGAAGCTGCAGACAAAGACAAAGTGGAGCTGCTGAATCAGCTGGAGGAGGAGCGTAGGAAGGTGGAGGACCTTCAGTTCCGCGTAGAAGAAGCTTGCATTACCAAAGGAGACCTGGAGAGTAATTTTAATACAGTAGGCTTGGATTACTCATTGTCTTCTCAAACGCAGACCAGACTGGAGCATGCCCACATTAAGGAGCTTGAACAGAGCCTACTCTTTGAAAAGACCAAAGCTGAGAAACTCCAAAGAGAGTTAGAAGACACTAGGGTTGCTACTGTGTCGGAAAGATCTCGTATTATGGACCTTGAGAGGGACCTTTCACTGCGAACAAGAGAGGTAGCAGACCTGCAGCTGCGTCTTGGGACCCAACAGGGCTCTGAGGACTCAAACTCTACGGTTTCTCCCCTTCTGGAAGAAATAAACTCTCTGAGAGATCAGTTGGCTTCCCAAGAAGCTAAGCAGAAAGAAGAGCTGAAAAAGTACAAGGAGAAGCTTGAAGCTCAAGAAAAGACCCATAGTGAGGCAGCTGCCCAGGTTCAAGCTACATCTATAAGGCTCTCTGGTGACAACGAGCAGTTGCAGATGCGCTTAAGCCATGCTGAGAAGGAGAATGCTGACATTATTGAACTGTGGCGTTCCAAGTTGGAGTCTGCAATTGCCTCTCACCAGCAAGCCATGGAGGAGCTAAAGGTGTCCTCCAGCAAAGGCTCAGGTGCCCAGACAGAACAACTTATCGAAACCAAAAGTGCTCTAGAGAAGCTGAACATAGAGCACAAGTTGGCTCTTGAGGAGGCTGGAGCCAAACATGAGGCTGATGCTGCAGCTTGGACTCGGGAGAAGCAGGCACTGAAGGCACAGCTGTTGTCTTTGATTGAGGACAAGGAGCAACTGGAGGAGTCCCTACGGTCCAGTGTTGAAAGAGCAGAGGAGCAGCACCTTGTGGAGATGGAGGATGTTCTTGGAAAACTTCATGCTGCCGAACTTACGGTGAAGGAGCTTGAGGAGAAAGAAGGGATGTCGGCACAGCAGGCCCAAGACAAGGACCGACAAACCAAAGAACAGATGTCAGAAATTGTGGCTCTGCGCAGCCAAGTAGCACAAAGTAACCAGGAGCTTGGGACCCTGAAGAGTCAATTAGAGATGATTCAGAGCCAAGGGAACAACCAGGGTGCCATGGTTAGTGAATTGAGCTCACAGTTGGAGGGCCGACAGCAGGAAGTCCTCTCTTTACAGCAGAGTCTGACAACTGTACAGCAGGAGAAGGACATCCTGGAACAAGAACTTGGAGGCCTGAAACAAAGGTTGGCTGAAAGCACAGATGAGCAGACTAAATCATCAAACACTATGCAAGaAACACTTGAGAAGCTCAGTAAGAAAAAAGAGCAGTGCACATCTCTGACCACAGAATCAGAGTCTCTTAGAAGTCAACTTTCCGGGCTGGAGAGAAAGCTGAAGGCTGCAGATGAACGGCTTGAGCAGCTTTCAAAGGACAAATTCAAGCTGGAAAATGATATTTCAGACATGATGAAGACATCCGGTGATAGTTCAGTACAGCTGACCAAAATGAATGAAGATCTCATACAGAAAGAAAGGAGGCTTGAGGAGTTACAGAGTCAACTatcagaggagaaggagaaggcgGTGCACTTGAATGAACAACTCCAGCAGGAACAGTCCCGCAGAGAGCAGGAGCTGAAAGAGACCAGAGATACACATCAGTCTCAAATAAGTAGCCTTCAGGACAAGATTGCTAACTTGGAGAAGACTGTTAAACAGGGTGAGACTCTGGTTGAGGAGCTCAAGGCCTCACAGGAGAAATCCTTGTCTCAGGCTTCAGAGCTCCATGTGAAGGAACTTGAGGTTCTGCAATGTCAGGTTGACAAGTGGAAGCAGGAGCTCTCCTCCTCCACGGACAAAACCCAGGAGCTGGAGAAGTTGGTATCTGAGCTGCAGCCATACAAGGAACAAGTTCAGGCTTCAGAGGCCTCTGGCAAGACTGCTGAGGCTCTGGAACAGCTGACAAAAGAGAAGGCCAGTTTGATGCAGGAGAAGAACGAAGCCCAATCTCTATTGGAAGAGCTCCGGAGCGCCAAGCAGAAGATGGAGACACAGCTGAAAACATTGAAGAAAGATAATTCCAAGTACCAGGAAGATCTGAATGTATCCAAAGAGCAGCTTTGCATAGAAACTCAGAGGACTGAGAGTCTGTGCCAGGAAAATGAGGAGCTTAAAGAAGTTGTTACTGTGAAGACACAGTCCCTGCAGATGCTGCAAGATGAGAACAACAAGCTGACTCGGGAGATTGATAACAGTCACAAAGAGCAGAGTGAACTTGTGAAGctcAAGGATGAGCactcaaaactcaaaaaacagttgaagcaaagCCTGCCAAATAATGCCTTCAGTGAGAGCAGCTTGAAGGAGCAGTTTGAGAAGGAGAAGGCTGCCCTCCAACAGTCCATCCATAAAAACAGTGCCTTCATTTCAGAAAAGGAGCAGCAGGTGGAAAAGCTGATGAGCGAGCTGATTGGACTGCGTGGGGAAAGTGCCTCAGTTGAGACACTGCAGGGTACAATTCAGGCCTTGGAGCGGGACAAGGCTAATCTACAGGGCCGTGTTCAAAGACTGGAGAAGGACCTGGCTGCAGGGCCTGACACCAACAAGTCCTCAGGTGATGCAGTTTTGGACCAACTAAGGGAGGATAAGGAGACTGCAGAGAGTCAGGCAGCGATTGAGTTCCTGAATTCAGTCATCATTGACCTCCAGAGGAAGAATGAGGAACTCAAGGACAAACTGGAGAAAATGGCAGCTGCTGCTCTCAATGGGAATAATCCAAGTGAGCTGGATAACTATGACGGACATGACAAGGAACCCGTGAAGAAGAAGGCTCCTCCTAGGTTGTTCTGTGACATCTGCGACTGCTTCGACCTCCATGACACCGAGGACTGTCCCACACAAATGCAGATGCCCGACTCCCCTCCACACACCACCTACCACGGCAATAAGGGCGAAGAACGGTCCTACTGCGATATCTGTGAGGTCTTTGGCCACTGGACCGAATCCTGTAATGACGACCAGACCTTTTAAGCCTTTTTCCACCCTCGTTCGCACAATCAGTATATTTGCACATCATGTTAGATTACGCCGTGCTTTCAAAGTCTTGGTTTGTATGTGTGCATTTCGTGTGCTTGTTTCCGCCAAGCGTCTTTATTGTCCATGCCAGTCCATAAGGGCTTATATTGGAGAATGATCTCCTCAGAATCTCTTTCCAAAAATTCACACAtcctacactgtgtgtgtgtgtgtgtgtgggtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctgggtttgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84680 lncRNA upstream 56751 20026910 ~ 20027166 (+) True G63204
TU84679 lncRNA upstream 57162 20025755 ~ 20026755 (+) True G63203
TU84678 lncRNA upstream 58169 20024913 ~ 20025748 (+) True G63202
TU84668 lncRNA upstream 65505 20018117 ~ 20018412 (+) True G63192
TU84666 lncRNA upstream 67256 20016232 ~ 20016661 (+) True G63190
TU84965 lncRNA downstream 282425 20392407 ~ 20392631 (+) True G63385
TU84955 lncRNA downstream 331729 20441711 ~ 20442055 (+) False vps13a
TU84956 lncRNA downstream 332172 20442154 ~ 20442952 (+) True G63377
XR_005639468.1 lncRNA downstream 448358 20558340 ~ 20564445 (+) True LOC120560275
TU85049 lncRNA downstream 455686 20565668 ~ 20566142 (+) True G63451
XM_039803889.1 mRNA upstream 927 20076882 ~ 20082990 (+) True zcchc8
XM_039803890.1 mRNA upstream 927 20076882 ~ 20082990 (+) False zcchc8
XM_039803891.1 mRNA upstream 9653 20067457 ~ 20074264 (+) True rsrc2
XM_039803892.1 mRNA upstream 9653 20067458 ~ 20074264 (+) False rsrc2
XM_039803918.1 mRNA upstream 49820 20031875 ~ 20034097 (+) True LOC120560988
XM_039804633.1 mRNA downstream 52015 20161997 ~ 20168159 (+) False LOC120561472
XM_039804632.1 mRNA downstream 52017 20161999 ~ 20168159 (+) True LOC120561472
XM_039804640.1 mRNA downstream 58738 20168720 ~ 20172092 (+) True psmd9
XM_039804635.1 mRNA downstream 71202 20181184 ~ 20191466 (+) False LOC120561473
XM_039804637.1 mRNA downstream 71202 20181184 ~ 20191466 (+) False LOC120561473
TU84360 other upstream 634967 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1402756 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1664327 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1667911 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1752687 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 367830 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 367830 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 566435 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1478894 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2819917 22929899 ~ 22930205 (+) True G63905

Expression Profile