RNA id: XM_039803905.1


Basic Information

Item Value
RNA id XM_039803905.1
length 1747
RNA type mRNA
GC content 0.56
exon number 11
gene id LOC120560975
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14289002 ~ 14312345 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACGAGCCCAATCCTGACCAACTTCCAGGGCAGCAGTAGTGAAGTTTGGAGAGGAAAATTCTGACTTCGTAAACAGTTGAGAAGCTCACCAAACATAACACTGACGCAGGCCAAAGCCAGGCAGCCACTATGGACGATTTAGACGCGTTGCTGGCGGACCTGGAATCTACTACGTCCCACATCTCAAAGCGACCGGTGTTCTTGCCAGAGGAGACCCCCTACTCCATCCCCACCGGAGGACACTCCTACCAGGATGTGTCCGCTCCACCTCCAGTCCCTCCTCCACCCTCAGCCGAGGCTCTGAACGGGTCACTGATAGACCAGCCGGACTCCCTCCACTCCTCTCAGCAGTCGTTAGGTTCCGCACAGAAGAGCTCATGGTCCAGGGACAGTAGCAGCTCCCCGTTGTCTCACATCGAAGAGGACCACGTCTACAGttttccaaacaaatcgAAGTCATCAGACTCGTCCACAGCAGCCATGACCTCCGCCATGGGCAGTAACCTCTCGGAGCTCGACAGGCTGCTGCTGGAACTCAACGCGGTGCAACAGAGCTCCCCTTCATTCCCCACCACAGAGGAGGCCGCTCCACCCTTACCCTCCTGCAGCATCACCCACTACGAGAACGGCGGCTCCCCAGACATCATGGTGAGCCCCCCCCCTCAGGAGAAACCCAAAAGGAACGGAACGAGGCTGGACGAGGCCCGACCCACCGTGGAGAGTCTGCTGGACGAGCTGGAGGGCTCAGTGCCTTCACCCAGCTCCTCCGCTCGCCACAGCGATTTGGACTCGCCCTCTCAGCAGCAAGCCAGAATTTCAGCTTCCTGTGCCACCAGAGAGCTAGACGAGCTGATGGCCTCTTTGTCTGACTTCAAGATTATGGCCCAAGGGAAGGGCGGCGTTCCCGGTGGGCCTCTGACACAGGTCAACAAGCTGGACAACATGCTCGGGAGCCTGCAGTCGGACCTCAACAAACTGGGGGTGCAGACGGTAGCCAAAGGAGTTTGCGGAGCCTGCTGTAAACCAATTGTGGGACAGGTGGTGACTGCCATGGGCCGCACATGGCACCCTGAACACTTTGTGTGCACACACTGTCAGGAGGAGATAGGCTCGAGGAACTTCTTTGAGCGCGAAGGACAGCCATACTGCGAGACGGATTACCACAACTTGTTCTCCCCACGGTGCTACTACTGCAACGGGCCCATACTGGATAAAGTTGTGACGGCGCTGGATAGGACGTGGCATCCTGAACACTTCTTCTGCGCTCAGTGTGGATCCTTCTTTGGCCCAGAGGGCTTTCATGAAAAGGATGGAAAAGCCTTTTGCAGGAAGGATTACTTTGACATGTTTGCGCCAAAATGTGGCGGCTGTGCCAGAGCCATTCTGGAGAACTACATCTCGGCGCTGAACAGCCTTTGGCATCCCGAGTGTTTTGTTTGCAGGGAGTGCTTCACCCCGTTTGTGAACGGAAGCTTCTTTGAGCACGATGGGCAGCCCTACTGTGAAGTGCACTACCACGAGCGCCGCGGCTCCCTCTGCTCCGGCTGTCAGAAGCCCATCACGGGACGCTGCATCACCGCCATGTCCAAGAAGTTCCACCCGGAGCACTTTGTCTGTGCCTTCTGCCTGAAACAACTCAACAAAGGCACCTTTAAAGAACAAAACGACAAACCCTACTGCCATGGCTGCTTCGTCAAGCTGTTCAGTTAGGGAGTTAGGGGGTTAGGGAGTTAGGGAGTTAGGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82269 lncRNA downstream 3115 14284175 ~ 14285887 (-) True G61423
TU82268 lncRNA downstream 6654 14281851 ~ 14282348 (-) True G61422
XR_005639479.1 lncRNA downstream 34499 14252255 ~ 14254503 (-) True LOC120560401
TU82265 lncRNA downstream 34522 14252253 ~ 14254480 (-) False LOC120560401
TU82249 lncRNA downstream 55564 14219347 ~ 14233438 (-) True G61404
TU82274 lncRNA upstream 1250 14313595 ~ 14313932 (-) True G61425
TU82283 lncRNA upstream 51378 14363723 ~ 14364326 (-) False si:ch73-138n13.1
TU82482 lncRNA upstream 75178 14387523 ~ 14387739 (-) True G61559
TU82488 lncRNA upstream 99052 14411397 ~ 14418905 (-) True G61564
TU82490 lncRNA upstream 104830 14417175 ~ 14423811 (-) True G61566
XM_039802862.1 mRNA downstream 28763 14255697 ~ 14260239 (-) True LOC120560399
XM_039803876.1 mRNA downstream 40191 14246483 ~ 14248811 (-) True LOC120560956
XM_039802118.1 mRNA downstream 146744 14107403 ~ 14142258 (-) True htr7c
XM_039802083.1 mRNA downstream 316866 13963143 ~ 13972136 (-) True LOC120559998
XM_039804379.1 mRNA downstream 512783 13740353 ~ 13776219 (-) False nr6a1a
XM_039804492.1 mRNA upstream 2249 14314594 ~ 14317390 (-) False ctu1
XM_039804491.1 mRNA upstream 2249 14314594 ~ 14317354 (-) True ctu1
XM_039804463.1 mRNA upstream 5252 14317597 ~ 14319518 (-) True crybb2
XM_039804464.1 mRNA upstream 5252 14317597 ~ 14319511 (-) False crybb2
XM_039804461.1 mRNA upstream 12585 14324930 ~ 14327512 (-) True LOC120561371
TU82089 other downstream 699670 13589039 ~ 13589332 (-) True G61264
TU81433 other downstream 3099261 11189142 ~ 11189741 (-) True G60715
TU80745 other downstream 5886436 8401022 ~ 8402566 (-) True G60145
TU80531 other downstream 6401599 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 6704483 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_252 other upstream 626630 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 632151 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_254 other upstream 636414 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_255 other upstream 639157 14951502 ~ 14951583 (-) True trnas-gcu
unassigned_transcript_256 other upstream 655334 14967679 ~ 14967760 (-) True trnas-gcu_1

Expression Profile