RNA id: XM_039803912.1


Basic Information

Item Value
RNA id XM_039803912.1
length 802
RNA type mRNA
GC content 0.41
exon number 2
gene id mtrfr
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19941473 ~ 19942849 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgttttttataaaataattgaTATTACCTGTTTGGTGACACACAAAGCGATGTAATGCTGGCGTTCACTTTCTATGTTTATTTAAAGACATGTCGCGGCTTGTCCAGTTCATGAGCTGTATGTACAGTGTGTCCAGTCGGGTCATATGGAGAGGTTCTCCCAGTGTCCCTCCACTGCTAATGCCGCTCCCGTCTGGACCGACATGTGTTTTGGCAGCCGGCAAAAAGGACTTGATAGACCTTCCTGTCCTGAATGAGGACGAGCTCGAAGAGCAGTTTGTGCGAGGATCTGGACCCGGAGGACAGGCCACCAACAAAACCAGCAACTGTGTGGTGCTCAAGCACATACCCAGTGGGATTGTTGTGAAGTGCCATCAAACCAGATCTGTGGATATAAATCGAAAGCGTGCACGGGAAATTATGCGAGAGAAACTTGATGTTGTTTATAAAGGAGAACTTAGTGAAGTTCTTGTAAAGAAGAAAGAGTCTGAGCTGAGGAAacaagagaagaggaggaaggcaAATGAGAatctggagagaaaaaaactctTTAAAGAAGCGCTGGCTGCAGACTCTAAACCTGGAAATGACACTGTTTGAAATGTTATAGAATGTATACTTGTATATTTCTGTACTTTAGGCAGATTGAATAACAAAACCTGGAAAGGTACTGTCAACTGTTCTAAATCCAATTAgccttttatttgtatagcatcTTTCATGCAAAGTTACAATACAACTTACATCACCTAATACAAGACACAAGAAAAAACgagaaaataaatcaaatattgTCAAATGTT

Function

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0003747 translation release factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84572 lncRNA upstream 66464 19873101 ~ 19875144 (+) True G63128
TU84504 lncRNA upstream 109281 19780965 ~ 19832327 (+) True G63087
TU84494 lncRNA upstream 178554 19759812 ~ 19763054 (+) False c6h2orf68
TU84495 lncRNA upstream 178554 19760754 ~ 19763054 (+) False c6h2orf68
TU84485 lncRNA upstream 194139 19746949 ~ 19747469 (+) True G63076
TU84665 lncRNA downstream 72155 20015004 ~ 20015249 (+) True G63189
TU84666 lncRNA downstream 73383 20016232 ~ 20016661 (+) True G63190
TU84668 lncRNA downstream 75268 20018117 ~ 20018412 (+) True G63192
TU84678 lncRNA downstream 82064 20024913 ~ 20025748 (+) True G63202
TU84679 lncRNA downstream 82906 20025755 ~ 20026755 (+) True G63203
XM_039802415.1 mRNA upstream 49949 19889250 ~ 19891659 (+) True arl6ip4
XM_039803582.1 mRNA upstream 54138 19883210 ~ 19887470 (+) True mthfd2
XM_039803014.1 mRNA upstream 135066 19800122 ~ 19806542 (+) True selenom
XM_039803002.1 mRNA upstream 178084 19759596 ~ 19763524 (+) False c6h2orf68
XM_039803909.1 mRNA downstream 979 19943828 ~ 19948469 (+) False kmt5ab
XM_039803908.1 mRNA downstream 981 19943830 ~ 19948469 (+) True kmt5ab
XM_039803916.1 mRNA downstream 40986 19983835 ~ 19984968 (+) True LOC120560983
XM_039803917.1 mRNA downstream 59101 20001950 ~ 20003895 (+) True LOC120560984
XM_039803918.1 mRNA downstream 89026 20031875 ~ 20034097 (+) True LOC120560988
TU84360 other upstream 492658 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 1260447 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 1522018 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 1525602 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 1610378 18330705 ~ 18331230 (+) True G62513
XR_005639482.1 other downstream 534963 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 534963 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 733568 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 1646027 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 2987050 22929899 ~ 22930205 (+) True G63905

Expression Profile