RNA id: XM_039803939.1


Basic Information

Item Value
RNA id XM_039803939.1
length 2067
RNA type mRNA
GC content 0.52
exon number 17
gene id txnrd2.2
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 5966810 ~ 5995404 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGCACATACCCGGTCTGGGTCCTTTCACAATAACAACATGGCTGCTTTCTGTAGGGGCAGACACCGGTGGAAAAGGACTAATTTTCTGCATGTTTTGACAAGAAACCTGACAGGGAAGTATGACTATGACCTGGTGGTTATTGGTGGTGGATCAGGAGGCCTTGCCTGTTCCAAAGAAGCGGCACAGTTGGGACAGAAAGTAGCTGTTTTAGATTATGTGGAGCCATCTGTTAAAGGTACCAAGTGGGGTCTTGGTGGTACATGTGTTAATGTTGGCTGCATCCCTAAGAAGCTCATGCACCAGGCTGCTCTACTTGGTACTGCAGTCAAAGATGCTAAGAAGTATGGCTGGCAGATCTCAGGGCCAATCTGTCATGACTGGGCCACCATGGCAGAGGCTATTCAAAACCACGTCAGGTCCCTGAACTGGGGGCACAGAGTTCAGCTCCAGGATAAGAAGGTGAAGTATCTGAACGTCAAAGGGAGTCTGGTGGATAAACACACTGTTAAAGGACTCTCGAAAGCTGGGAAAGAGATGATCCTGACTGCCAAGAACATTGTGATCGCCACAGGTGGACGACCCAATTACCCAACAAATATCCCAGGAGCAGTGGAGCACGGCATCACCAGTGACGACATCTTCTGGCTGAAAAAGTCGCCCGGGAAAACGCTTGTGGTTGGAGCCAGCTATGTGGCTCTGGAGTGTGCAGGCTTCCTCACCGGCATTGGCTTGGACACCACAGTGATGGTCCGCAGCATCGCCCTCCGGGGGTTTGATCAGCAAATGGCAGGTCTAGTGACGGACTACATGGACGCATATGGGACCAAGTTTGCATGGATGTGTGTCCCAAAGAGAGTGGACAAACTGTCCTCAGGAGCTCTCCAGGTGACCTGGACTGACACCCACACAGGCAACGAACACAAGGACACCTACGACTCTGTGTTATGGGCAGTTGGCAGAGCCCCTGAAACCAAAGCGCTGGGCCTGGACAAGCTTGGCGTGCAACTCAGAAAGGAGACGGGGAAAATAGTTGTGGGCGCTGACGAATCCACATCGGTGCCAAACATCTACGCTTTCGGTGACATCGGCGAGGGTCGTCCTGAATTAACCCCAACAGCCATTAAAGCGGGAAAGTTTCTCGCCCGCAGACTGGCTGGTCACAGCACTGAACTCATGAACTACGACAACgtgccCACCACAGTGTTCACCCCCCTCGAGTACGgctgtgtgggtctgtctgaggaGGAGGCTGAGAAGAGGCATGGGAAAGACGGCATAGAGGTCTACCATGCTTTCTACAAGCCTCTGGAATTCAGTGTTGCAGAGCGCGATGCCAGCCAGTGTTACTTAAAGGTAATATGTGAGCGGGGTGGAGACCAGAAGATCCTGGGTCTGCACTTCACCGGTCCAAACGCTGGGGAAGTCACACAGGGCTTTGCTATGGGCTTCCAGTGTGGAGCAACATATTCCCACTTGTTGCAGACGGTAGGCATCCACCCAACCTGTGCCGAGGAGCTGACCAAGGTCAACATCACAAAGCGGTCCGGCTTGGACGCCACGGTAACCGGCTGCTGAGGTTAAGCACCTCGGTCTCTGAACACTGGTGAGCACACAGGGTCCGTCTGTGGCACTAGAAAGAAGTTAGCCTGGCTTCCTCCTGCTTCTTCTCCTTGTCCCTCTCCTTCTACATGGCCCCAAAATGACCCCCAGTTTCCCAGTGCTTTCTCTGGGATCAGGGTCTCTTCATAGGCCAGTCATGCAGATCATCACTGGCTGCCCAGGTTAGTGTCACATCATAACCAAGGCTATGATTATTCCATGTACATGGATTTTGTGAGTGTATCCTCTAAAAGCCCAGGGTTATAGATCAGGTTAGTGAGAGGCCTGACCGCAGAGCGAGCGTCTTTTAAATAAACAGGCTCATCAATCAGGATTAAGGCCTGTGCTCAGGGTTTTGTTGAAATCATAACGTTTTactgaatatatatattctgcAAATATTGTTGTTTCTCCGGCTGTACTTCCTGTCCATTAGTCTTGGAGGTGACACATACCATATACCCC

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004791 thioredoxin-disulfide reductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function

KEGG:

id description
K22182 TXNRD; thioredoxin reductase (NADPH)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79863 lncRNA upstream 1975 5964470 ~ 5964835 (+) True G59434
TU79862 lncRNA upstream 3148 5963413 ~ 5963662 (+) True G59433
TU79745 lncRNA upstream 352720 5609331 ~ 5614090 (+) True G59354
TU79744 lncRNA upstream 371868 5590570 ~ 5594942 (+) True G59353
TU79739 lncRNA upstream 377910 5588590 ~ 5588900 (+) True G59350
TU79908 lncRNA downstream 8208 6003612 ~ 6003870 (+) True G59471
TU79937 lncRNA downstream 156912 6152316 ~ 6152581 (+) True G59499
TU79940 lncRNA downstream 196674 6192078 ~ 6192278 (+) True G59502
TU79942 lncRNA downstream 225178 6220582 ~ 6220856 (+) True G59504
TU79944 lncRNA downstream 252665 6248069 ~ 6248358 (+) True G59506
XM_039802588.1 mRNA upstream 4738 5668275 ~ 5962072 (+) True arvcfb
XM_039802587.1 mRNA upstream 4738 5668275 ~ 5962072 (+) False arvcfb
XM_039802595.1 mRNA upstream 4738 5668275 ~ 5962072 (+) False arvcfb
XM_039802589.1 mRNA upstream 4738 5668275 ~ 5962072 (+) False arvcfb
XM_039802592.1 mRNA upstream 4738 5668276 ~ 5962072 (+) False arvcfb
XM_039804197.1 mRNA downstream 15114 6010518 ~ 6041664 (+) True gnb1l
XM_039804198.1 mRNA downstream 19117 6014521 ~ 6041664 (+) False gnb1l
XM_039803237.1 mRNA downstream 502709 6498113 ~ 6627092 (+) True sema4c
XM_039803238.1 mRNA downstream 502709 6498113 ~ 6627092 (+) False sema4c
XM_039803239.1 mRNA downstream 559268 6554672 ~ 6627092 (+) False sema4c
TU79733 other upstream 469056 5495155 ~ 5497754 (+) True G59347
TU79728 other upstream 513316 5448136 ~ 5453494 (+) False golga3
TU79729 other upstream 513316 5448136 ~ 5453494 (+) False golga3
TU79671 other upstream 615679 5053266 ~ 5351131 (+) False fbrsl1
TU79509 other upstream 1435645 4530110 ~ 4531165 (+) False mrpl41
TU79987 other downstream 679513 6674917 ~ 6677484 (+) False kat6a
TU80145 other downstream 973729 6969133 ~ 6976802 (+) False add2
XR_005639484.1 other downstream 1604689 7600093 ~ 7623699 (+) False susd1
TU80342 other downstream 1630403 7625807 ~ 7629074 (+) False zbtb26
XR_005639603.1 other downstream 1689241 7684645 ~ 7684763 (+) True LOC120561481

Expression Profile