RNA id: XM_039803944.1


Basic Information

Item Value
RNA id XM_039803944.1
length 2327
RNA type mRNA
GC content 0.45
exon number 7
gene id fbxo4
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24110320 ~ 24117183 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATGTCAAATATGGTGTTGTCGTCATCTCTCTAGGTCCGTATTATAGTGtaatgtaggctatattatCACTCATACTTGGAGTCATGGCAGGAAAGATCGAGCAGCTCAACCAGTCCGTTGTGATCGGCAGGCTCAGGCGGTTCAGAGAGAGATACTTTTCAAACAGTGGCAAAGTTGTCAAAGACGACTTGACACGGGATGTAGACACGGGAGAAGAGCCACTACCGGGATTTATGGATAGTTTACCGGTGGACTTACAGTTTCGGATCATGACCCTTCTGTCTCCTGCGGATATCTGCTGCCTTGGAGCCACCAGTCGGTACTGGAGGGCCATGGTTAGAGATCCATTACTGTGGAGATACTTCCTGCTCAGGGACATGCCATACTGGCCCTCCATTGATCATGTGAGCATGCCCCAGCTGGAGTTGTTGGATGCCCCACTAATCAATGAAGATGAGAGCCTGGATGATAGAGAAGAGGGGGATGACAAAGTGATGGAATTGAAATTTGACTACATGTCAGAaTACCTGAAAGGCTGTCCATCTTGCAGACAACAATGGCTTCCTTCGCGGCCGGCATATGAGGTTGTAACCTCATTTCTTCAGTCTCTGGTGCCCTCATCTGAACCACGTTATGCCATGTTTGGCCCTGGCATGGAGCAGCTGGATGTCTCTTTAGTCACAAGGCTCATGCATGCCCCAGATGTGCTTCCTGTGTCAGGAACTCCTCACAGACAGATAAATGGTATTGGCTCAGGGATCAGTTACATGTTCAACAACCAACACAAATTGAATATCCTGACGCTGTACTCAACCAATAGGGCCGAGAGGGAAATAGCCAGAGTGCAGCAGCAGAGCATCAGTAATAAACTTTTTAGCTTTGAAGGATCAGATGACTCAGGCTATCCAGTCTACAGCCCTGCTCCTCAGGTCCAGCAAGTGTGCCAGGTGGTGGATGGTTTCATCTATGTAGCCAATGCAGAGCCTGGGAGAGGTGACAGGGATTCTGAGGGGGCTCAGATTCGGGCTGTGCTGAGCTCTGCCGAGGGTTCAGCATCCAGGCCTCTGCTGGTGCTCTCCTGTGTCTCCAGAGAAGAAACGGAAGAGGTCAGGATAACCAGTCTGCAAACTTTTACCAGCAGAAACAGGGCAAGGTGTCGCACTCCCTGTGTCGACGTAGCAAAGAGACTCGGCCTACCCCAGCTGGCTAACCCCTGGATGGTGCAGGATACCGTAGCCGAATCCCTGTCAGGTCTTCTGGATGGCATTTCCTGGTTGCTGAGATGTTCTGGAGTCAAGCTCTATGGTAGCTAGTATCCAGCTTCTGCTGCTGCCGCCAGATGAATGAAAGCCACAAATTGCATTACTGCGTCATCCTAACACCAAGACTACAGAATTTCCTGAGTAATGTATACCACATGTGCGCTGAACGTCTCATGATTGGAGCACTGCCTTTGGGATTTCATGAACTGGATCTGCAACAGAACTAATGGGTTTCTAACTATAACTATGACTTGCATTTCCGTGACCATCGGACACTGCGTGCACTTGTTAGACGTTATTTCCTGCGTGGAGTGTGCTGCGCTGATAAAAAAGACGTATATAAAATGTTGTGCCACTTCCTGTGTCCACTATTTGGCActagacaacacacactatcACTACGTCAAATTTAAAGGTGGGGGCACTATCAAGCCAATTTGCTACACCAAAGCCTGAGACCCATATCACATATAATTTTTTTCACCACTTCTGATAGGTATGCATAGTTCCATGCGTTTTCGAGCACCTTTAGCCCCtcaaaaatgtgatttagttctaaaattaataatataggGATTTCAGGGCCTGAGGACTGCCCTAGAAAGTGGTGAAATCCATCCATGTAAAACCTCACTTTGACTATTACTACCCTACTTATCTTATATGCTACTTATATATGTAATAAGTATGTGGTACTTTAATTTATGTGCCATATCATGATGAGGTTTACAATCGGTGAAAGAATCTGGTGGCCCACTGTTTGGTTTAAAATGGGTAAGAGATTGTAAATTTTTTGACATGgcattttcagtgtttttttaaggCTCATAATGACCTGATTTACCACATTTTTACAGTTAGGCATATGTGCCAACAATCCTCCTACAAAAAGTCAGCTTGGATAACTCACACAAAATTCACTGCTTTCGGATCAATGATTTACAATCATATACTGCAAATATATGACTTTTAGAGCTAAACTGTAATACAAGCAAttgaataaaatattttatgtttatgCAATTAAGAACTGTTGCCTTTTGATACATGCTgcatatttata

Function

GO: NA

KEGG:

id description
K10291 FBXO4; F-box protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85970 lncRNA upstream 5968 24101506 ~ 24104352 (+) True G64188
TU85963 lncRNA upstream 51559 24049968 ~ 24058761 (+) True G64183
TU85948 lncRNA upstream 93252 24015078 ~ 24017068 (+) True G64172
TU85904 lncRNA upstream 360485 23744939 ~ 23749835 (+) True G64130
TU85900 lncRNA upstream 375027 23734824 ~ 23735293 (+) True G64127
TU85984 lncRNA downstream 47494 24164677 ~ 24169528 (+) True G64200
TU85987 lncRNA downstream 47494 24164677 ~ 24168564 (+) False G64200
TU86026 lncRNA downstream 117091 24234274 ~ 24234488 (+) True G64235
TU86043 lncRNA downstream 245292 24362475 ~ 24362909 (+) True G64251
XR_005639429.1 lncRNA downstream 397636 24514819 ~ 24518873 (+) True LOC120560123
XM_039803945.1 mRNA upstream 131 24105990 ~ 24110189 (+) True c6h5orf51
XM_039802040.1 mRNA upstream 96836 24004082 ~ 24013484 (+) True rgs7bpa
XM_039802041.1 mRNA upstream 96836 24004085 ~ 24013484 (+) False rgs7bpa
XM_039803739.1 mRNA upstream 109515 23992653 ~ 24000805 (+) True si:dkey-250l23.4
XM_039803179.1 mRNA upstream 203864 23758721 ~ 23906456 (+) True ipo11
XM_039803518.1 mRNA downstream 9680 24126863 ~ 24162470 (+) True ghra
XM_039802875.1 mRNA downstream 57258 24174441 ~ 24181811 (+) True znf131
XM_039802873.1 mRNA downstream 57498 24174681 ~ 24181811 (+) False znf131
XM_039802874.1 mRNA downstream 57498 24174681 ~ 24181811 (+) False znf131
XM_039802877.1 mRNA downstream 64734 24181917 ~ 24202984 (+) True nim1ka
TU85875 other upstream 417029 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 1180115 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 2511521 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 3432404 20676417 ~ 20677916 (+) True G63480
XR_005639483.1 other upstream 3621482 20477812 ~ 20488838 (+) False wdr31
XR_005639471.1 other downstream 706535 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 706536 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 1567789 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 1797199 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 2295686 26412869 ~ 26414597 (+) True G64814

Expression Profile