RNA id: XM_039803947.1


Basic Information

Item Value
RNA id XM_039803947.1
length 1793
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC120561006
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7220841 ~ 7223583 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtcaaCTACTGCTAAACTAATCCAAAGATGTGAAATGTAAGTGAAGCAGTCCTGGTCAGGTTCATATTATAttgaatgtaactaatattGATTTACATGTAACATTTCCATATTATAGCCTGAAGTCACCAaacaaacattgtatttttatgCCTATTACAGCCTGTTTCTATCTATCTTTGTAGTTTCCGTGGTTCCCAGTGAGGACTCTACTCCTTTTGAGTCAGCTGAGGAGGTTCTCACAGTGACCCAATCAGACTCCTCTCAACAAGAGTGAGATGCAGGAAACTGCAGGACATTCTGCAGAGCTCAGAAGATATTCCAGATGCAAGCGGGCATCCTTCCACCTCCACATCATGGTGCTTGCGCCAATCTGCAGCCCAAGATGAGTAGCGGAAAGCGAGGTCTCATCATCTGAGCTGCTTGCTGTCCTGCAACGTGGTTCCAGAGAAGAACTGCAGCCACTGCACATCTCCTGCCATCATTCGATGCAGAGACTGCATGCCAGAGGAGTGGCTGTGTACGGAGTGTGGCATACACAtccataaaaaacacacactccatAACAGGGAGTCCTGCATTGGGGGAATTTACAAGCCCATAGAGCCAACAGTGTGCTGCGTAAAGCAAGATGGCGGATATACACTGGTCAATCAAGTATGTCTTTTGCCtacagtgaggcctgtgcagtTGTGCACGTGTGATCCTGCAACCATAACAGAATCAGCTGGTAGAGCAATAATTATGGTTTGCATAAATGgtCGGTATGATTGGCACTTGTCAAACTTGTCTTGCAAATTATGTCTGGCACAGTGGACACCTGACATGAGCGACCTCATACGCACTGGGTATTGGCCAGCATCTGTGAATGCTGACACATTGTTTTCAGTGGATGTCTTTACTTCATTTGAAGAGTTGAAAACTGTGGCTCCCAGTTTGTCGCGTCAGGGTTTTTTGCGGATGTTGGAGAAGAGGACCTGTCAATTTGGAAGGGCTGGCAAAATCCATGGAGACGTATTCCAAAGGAGTTATTTGGAGTACACATTCTGCCAGTACCATTGGGAGAATATGGCCAGTGTAGAGCACTTCACCTGCCCGGCATGTACACCCAACAAGATAGCTCTTTGTGCAGATGGCAACAGAAAGCAGTACCGATTTCGACAGTCAAAAGGacTTGTGAAAAGGCGGAGGCTGAGTCTCAGAGACTGGAAGATTTCTACCTTCGCCTGATCTGCTCCACGATGTGCCTGGGGAGTTACAACGACATCATGGGCCGGGCCTCCGTCAAGGCAGGAAGGCTAGGAAACGGGGTAGGAGAGGCAGCCTTAGACGGCGCATCCGAGGAGCTACCAAGCTACCGCTACCACCGATGCTTCTCTGCAACCCACGATccttaaaaaacaaactggATGAACTGCGTCAACAGGTTGGAGCCTGCCAAGAATATCGTGAGTCTGGTCTAATGGCTTTTACAGAAACCTGGTTTAGTGACGAGGTGCCAGACAACTTTATTCAAATCGAAGGTTTCTCCCACCTACGTTTAGACACGGCAAGACACGGGGGGGTGGGGTGTGTATGTACATTAAAGATAGCTGGTGCCGTAACATTGCAGTGAGAGACAAAATGTAACCCAGACCTGGAGCTGCTGTGTGTTATCCTGCGGCCACATTATCTGCCAAGAGAATTTACcaacatatttgtgtgtgttgtgtatattcCACCAAGTGGGAATGCCAGCAGAGCAGCTAAGGCAATCACAGACTGTGTCCATCGCCATTTGAATTTGTACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80255 lncRNA downstream 72035 7101573 ~ 7148806 (-) False G59756
TU80254 lncRNA downstream 113805 7101573 ~ 7107036 (-) True G59756
TU80240 lncRNA downstream 137628 7025606 ~ 7083213 (-) True G59743
XR_005639537.1 lncRNA upstream 141849 7365432 ~ 7366200 (-) True LOC120560930
XR_005639545.1 lncRNA upstream 142674 7366257 ~ 7367921 (-) False LOC120560966
XR_005639544.1 lncRNA upstream 142674 7366257 ~ 7367921 (-) True LOC120560966
TU80304 lncRNA upstream 142688 7366271 ~ 7367921 (-) False LOC120560966
TU80309 lncRNA upstream 200580 7424163 ~ 7424364 (-) True G59802
XM_039803504.1 mRNA downstream 8830 7182813 ~ 7212011 (-) True erlin2
XM_039802066.1 mRNA downstream 51141 7161301 ~ 7169700 (-) True ch25hl3
XM_039803522.1 mRNA downstream 279105 6895202 ~ 6941736 (-) True hk2
XM_039802025.1 mRNA downstream 1158979 6048963 ~ 6061862 (-) True tbx1
XM_039802026.1 mRNA downstream 1158980 6048963 ~ 6061861 (-) False tbx1
XM_039804558.1 mRNA upstream 58833 7282416 ~ 7285425 (-) True znf703
XM_039803193.1 mRNA upstream 272928 7496511 ~ 7510835 (-) True LOC120560561
XM_039803195.1 mRNA upstream 299527 7523110 ~ 7526491 (-) True LOC120560563
XM_039803200.1 mRNA upstream 304996 7528579 ~ 7550201 (-) False lrp13
XM_039803197.1 mRNA upstream 304996 7528579 ~ 7550201 (-) False lrp13
TU80230 other downstream 223985 6991203 ~ 6996856 (-) True G59739
TU80011 other downstream 697167 6522759 ~ 6523674 (-) True G59563
TU79962 other downstream 794030 6426206 ~ 6426811 (-) True G59521
unassigned_transcript_243 other upstream 287638 7511221 ~ 7511291 (-) True trnag-ccc
TU80421 other upstream 360503 7584086 ~ 7584519 (-) True G59881
TU80531 other upstream 655841 7879424 ~ 7887403 (-) False anapc7
TU80745 other upstream 1177439 8401022 ~ 8402566 (-) True G60145
TU81433 other upstream 3965559 11189142 ~ 11189741 (-) True G60715

Expression Profile