RNA id: XM_039803949.1


Basic Information

Item Value
RNA id XM_039803949.1
length 2506
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC120561007
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 29220854 ~ 29223680 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATACTCTCTCTTTTTTGGAATGTGGGTGAACTGGCCCTCTAAAGTGGAATGTAGAATGTGTCAGTAGAATCCGAACACATCATCATGATTCTCTGCTTTGCTAGTCACAATTCACCTGTTGACTACAAGTTAGACACACTGCTGGCATTAAGAGAGGACAAACGTCagtgcagaaatataaaaagccAGGTGTTAGCCCCGCCACATTGAAGCTACATTATCAGTACGGTGCAGTTATTTCTTCAGGATATGGCTTTATGGTTCGTAAGTAATCCTCCCCGTGAGGATATGTCTGTTGAAGAGGAGATTGAGGAAGAGATTGAGGAGGAAATTGAGGAGGAGATTGAGGAGGAGATTGAGGAGGAGATTGAGGAGGAGATTGAGGAGTTAACAGAGGAAGTTGATGAGAAAATAGTGGAGTTTCAGGAGTATGCAGAGGTAGATATTATGAAGGAGGTTCAGGATCAGCCCTCTGTCTCCAACAGAGAAGACTACTCCTACAGTTCCTTCGCAGagACGGAGGAATCTGAGAGGTCTGAGAAATCGGCTGGTCTTCACAAAGCTctagaaaaagagaaaagagacaaagCTGCTCTTGAAGAGGCTTTGAGGAAGGAAAAAACATCCCATGCTAAACACAAAGGAGCCCTGAAGCAGGAGCGAAAAGAAAAAGACGCTCTTGCCAAGGCTCTGAGGAAGGAGCAAGCTGAGAAAAACCGTCTTCAAGTTGATATGGAGCACATGAAGGCACAGGTGGCTGATCTCAAGAAGTCACAGAAAGAGCAGCAGCGGAGCAAAGCAAAGCTGAAATCCACAATCACCGGAATGGCTGCTGAGCTTGAAGAGGACAAGAACGTGATTGAGAAGCTCCAGAAGGATCTGGAGGCGTCCTCTTGTCAGCAAGAAAAAGAAATCGCACAGCGTGATCGGGTGAATTGTGCCGAAATCAAGGCACTAAAGGATCGCATCACTGAGCAGTATGATGAAAGTCTGGAAAAAGACAATCAAATTCAATCCCTGCATCTCAATCTTCAGAATCTTCAAAGCGATATTGAATCCAAGGACAACATGGTTTCCTCACTGCAGCAGAAAGTGAACCAGTGGGCCTCAGATCTCAAAGAGGAACAAACTAAAAAATGGTCACTCCAAAGGAATTATGAAGCCGCTGTCTCCCAGCAGCAGAAGGAAGCAGAAGAACTAGACCATCTGACTCATGAGAACCAACAACTCGCTTCTGAAAAAAAAGGGCTGCAAGGTGAACTTGAGGCTGCTGTAAATGAGCGGCAGCTTCATCATAAACATCTTCTGGAAGCCCGAGAAGCTTGCAGCAGACTTGAGAAGGCCATTAAGACGGAGAAAGTTTGCTTCTCGACAGCATATAACAAGATCCAGATCCTAGAGAAGGAGCTCTCTGAGAAGAGTCTGGCTTTAGAAAAGAGCCAGATTGCTGAAAGATTCTTAAGGTTGCTTGTTAAAAACGAGAAGAAGCGCTATGCGCAGTTGGTTTCAGTAAAGCAGGCTGCAGTCGAACCTCTTGCAATCCCTAGCAACCAGCTGAGAGAAGCATCTGCAACCTCAGAACGTCTGATGTACGACATGCAGACTTTGAGGATGGAGAATGCAGACGTCAGAGCTAAATTTAACGTTATGGAGACAGAATATGACAGAATAAGATCTaaactctgctctctctctgagcGCCATGAAGAGATGATGTTAAAGAATAATGATATCATCTCTGAGAATAAGTTCACCATCACTAAGCTCCAGTTCATGGTAGATGGTTTCAAAGAGCAGCTGTCAGACAGCAAGGCGAGACAGGCAGAACTTGAAGATGCCTTAAAACAGGACCAGAAACAAAACCCGGAGTTGCAGCAAAGAGTTGATCAGCTCACCTCTGCTCTTGAAAAAGTATGGACCAGGTGTGAGAAGCACCGTGTGGAGCTCAAAGAGACTTTGAAAAAGCAGATTGAAACAATGGAGGAGAAGCAGAAGTTGGCCGTGGCTCTGCAAAAAGCTCACGACAGCTACGCCAGGCTTCAGGAACAACAGTCAAACTATCAGTACAGACACGTCAGTGACACTGAGCTCAGGCTCAACCAGCAGAAAACCGCCCTGGATGAGAGCGCAAAGGCTCTACAACATCTGCAACAGGAATACACACATCTGGGAAGGAGGCACAGCGACATTAATTCTGACTATTGTGAGCTGCTTAAATCTCACAGTGCCCTCCAAATCAGATATGACAGGCTCAGCTATGCACAAGGTAACCCACGACCAGAATTCAGCCCACCGCAGTTCACAGTAAAACCCTAATGTTTTGGTATACACGACATCTATTTCCAGTGGTGTAACATAATTAAAAGTATTCAGTCATACATTCAAAATCGATGTAGtgggcagcatggtggcccaatgggtAGTGCTGTGGTAACCTCACAGCACGAAGGTTCTaggttcgaatccaggtcgttcccggaacgacctggattcaaaCCTAGAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639509.1 lncRNA upstream 89638 29072941 ~ 29131216 (+) True LOC120560778
TU87739 lncRNA upstream 115245 29103988 ~ 29105609 (+) True G65570
TU87732 lncRNA upstream 122541 29078426 ~ 29098313 (+) True G65565
TU87618 lncRNA upstream 218674 28985613 ~ 29002180 (+) True G65473
TU87569 lncRNA upstream 373607 28845626 ~ 28847247 (+) True mboat4
TU87928 lncRNA downstream 323769 29547449 ~ 29614880 (+) True G65710
TU87931 lncRNA downstream 365327 29589007 ~ 29591364 (+) True G65713
TU87952 lncRNA downstream 547959 29771639 ~ 29771864 (+) True G65734
TU87956 lncRNA downstream 588292 29811972 ~ 29812218 (+) True G65738
TU87965 lncRNA downstream 712213 29935893 ~ 29936995 (+) True G65745
XM_039804594.1 mRNA upstream 6059 29203493 ~ 29214795 (+) False ptgs1
XM_039804595.1 mRNA upstream 6059 29204121 ~ 29214795 (+) True ptgs1
XM_039804596.1 mRNA upstream 6059 29204121 ~ 29214795 (+) False ptgs1
XM_039802802.1 mRNA upstream 148687 29060747 ~ 29072167 (+) False zgc:152968
XM_039802798.1 mRNA upstream 148687 29062522 ~ 29072167 (+) True zgc:152968
XM_039804370.1 mRNA downstream 19042 29242722 ~ 29248901 (+) True pmpca
XM_039803794.1 mRNA downstream 35238 29258918 ~ 29260327 (+) True LOC120560903
XM_039803258.1 mRNA downstream 73442 29297122 ~ 29343400 (+) True LOC120560594
XM_039803259.1 mRNA downstream 73442 29297122 ~ 29343400 (+) False LOC120560594
XM_039804273.1 mRNA downstream 120900 29344580 ~ 29351756 (+) True ubac1
TU87117 other upstream 1919084 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2562885 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2578373 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 2724526 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 126444 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 963168 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 1023207 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 1024259 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 1024303 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile