RNA id: XM_039803956.1


Basic Information

Item Value
RNA id XM_039803956.1
length 6672
RNA type mRNA
GC content 0.53
exon number 40
gene id LOC120561008
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8089036 ~ 8161257 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agaagagagagagagagagagggtgggagCTTCCACTCACTCTTTACAGTATGTGATCACCGGTCTGCTGCATTACTCTACAAAGCCATTCCCCTATATTCCTCCactcactccctccctctctcctccgctCTATCTCTCTGTAAGCAGTATTCTCCAGTCGCTCTCGGTGCCTCACAGCTTTCTGCCCTGCCACagcacatctctctctcccctctgctcctctctctgtccccagaGAGGATGACATCCCTGAATTTGATGAACCAGCGAAGCTCTCATTCTGGCTGGTGGCTTCCGAGGGAGACCCCACATGAACGGGCTTACTGGACGAGGAGGTGCCGCGTCTAAGGAGCTTTGTAGAAAAGCTGTCAGCTGTAGCAGTCTCTGTATTAGTGACTACATCCATCAACTCTCTAAATAAGACTGTCTCCTTTGGAAAAGCATCATTAAAAACACGAAACAGCCAGACTTGCTGGACACATGTCACAGGTTGAACAGGAGATCTCCATTGGCCAGAGGAAGATGTCTGATCTTGAGTTGGTGCTGCAGCAGAAGGATATAGAGTTGAAGGCCTCAGAGACCCAGAGGACCATCCTGGAACAGGACCTGGCAACCTACATCACAGAATGCAGTAGTCTAAAGCGCAGTTTGGAACAGGCTAGAATGGAGGTGTCACAGGAGGACGACAAAGCGCTGCAGCTCCTGCATGACATCCGGGAGCAGAGCAACAAGCTTCAAGAGATCAAAGAGCAGGAATATCATGCCCAGTTGGAGGAGATGCGAGTGTCCATAAGACAACTGGAGGAGGACCTGTCTGCCGCCCGTCGCCGTAGCGACCTGTATGAGTCTGAGCTGAAAGAGTCTCGGCAGACCAACGAGGAACTAAAGAGAAAGTCTACCGACTACCAGCATAGGATGCAAAAGGTCAAAGAGCAAGGCAAAGCAGATGCAGAGGAGCTGATCACCAAGTTGGAGAAGacCAGTACTGAGCAGCAGACCAGGATCCAGGATCTTCAGGAGAAACTTGCCAAGTCGTTAAAGGCCAGTGCTGAGGCTACAGACCTCCTTCAGAATATGAGAGTGGCCAAAGAGCGCATGGAGCGAGATCTGGAGAGGCTACACAACAAGGAAGACTCCAGTGACAGCCTGCGTAGACGCCTCCGTGAGActgagGATGGTAGGAAGACTCTGGAGAACCAGGTGAAAAGGCTGGAGATTGTGGAGCGCCGGGAGACTAAACTGAAGGACGAGCTCCAGAGCAAGGCCGGGCAGATTCAGCAGATGGCAGATAAGATTCTGGCGCTGGAGGAGAATTTGCGAGAGACCCAAACCACAGCCCAGCGGTTGGAGACTCATCTGAAGCAGAAGGAGAAGCTCTATGAAGACAAGATAAAGGTGTTGGAGGCCCAGATGAAGGCAGACATGGCTGATAAGGAGATGCTGGAGTCCAGTCAGAGCAaatatgaggaggaggtgcggGAGAAGTGCAGCATCATCAGCGAACAGAAGGCGACCATAAATGCTATGGAGTCTAAGATGAACAGCCTGGAGCAGAGAATTGCTGAGCTGTCTGAGGCCAACAAAATGGCAGCCAACAGCAGTATCTACACCCAGAAAAACATTATGTGTGGTCTCGGCAGGAAAGCCCAGGAGGAGATGATCTCAGAGCTTCGCCAACAGAAGTTCTACTTGGAGTCTCAGGCTGGGAAGTTGGAGGCCCAGAATGCCAAACTGGAGGAGCATCTAGAGAAAATAAGTCAGCAGGAGCAAAACAATAAGAGCCGCGTGCTGGAGCAGGAAACAAGGCTCCGAGAGATTGGTCTGGAGCACGAGGAGCAGAAGCTGGAGATTAAGCGTCAGGTGACAGATCTGACTCTGACGCTGCAGGAGCGCGAGTCCCAGATCAGCAATCTGCAGGCAGCTCGCCACGCTCTGGAGAACCAACTACAGCACTCCAAGACCGAGCTGGAGGAGACCACTGcagaggctgaggaggagaTCACTGTGctcagaGCACACAGAGATGAGATACAACGCAAGTTTGATGTCTTGAGAGACAGCTGTGCGGTGATCACAGATCTGGAGGAGCAGCTGACCACACTGACTCAGGAGAACAGTGAACTGAACCGCCAGAACTTCTACCTGTCCAAGCAGCTGGATGAGGCCTCTGACGAGAGAGAAGACCGGCTGCAACTCAGCCAGGATGTGGATAGGCTGCGTCGGGAGGTGGCCGACCGTGAAATGCACCTTAACAACCAGAAACAGAACCTGGAGACACTGAAGACCACATGCACCATGCTGGAGGAGCAGGTTCTGGAACTGGAGACCCTGAACGACGAGCTGCTGGAGAAGGAGAGACAGTGGGACGCCTGGAGGGCAAcactggaggaggagaagaaccAGGCTGAGAGGAGGACCAGGGAAATCCAGAGACTGCTGGATACAGAGAAACAGAACAGGCATCGTTCAGAGCAGCGCAGCTCTGAGTCTCGCCAAGCTGTGGAGCAGGCAGTTAAGGAGCACAAAGCTGAGATCCTGGCCCTGCAGCAGGCCCTCAAAGACCAGAAACTCAAAACTGAGAGCCTTGCCGACACTTTGAATGATCTGGAGAAGAAGCATGCCGTGCTGGAGATGAACGCCCACAGTTTGCAGCAAAAGCTGGAGAGCGAGAGGGATCTGAAGCAGAGGCTGCTGGAGGAGCAAGAGAAACTGCAGCAGCAGATGGATGCCCAGAAGACCCACATCTTCCGCCTGACCCAGGGGCTGCAGGACGCTCTGGACCAGACTGACCTGCTGAAGACTGAAAGGACTGACCTGGAATACCAGCTGGAGAACATCCAGCTCCACCTGCAGGCTGTGTACTCCCATGAGAAGGTGAAAATGGAGGGTACCATCACCCAGCAGACCAAGCTCATAGACTTCCTCCAGGCCCAAGCCCATGGtggctccaaaaagaaaaagGGTCTGTTTGGGCGTCGTCGAGAGGACCTGTTGGCTGCCATGGCTGCCCAGGCCCAGGCCCAGGCTCAGGGTCAGGGTCAGGGTCAGGGGCAAGGCCAGGTTTCCCCTGTGCCCTCCATCCAGCCGGTGCCTCTGCAGTACAGCGACATGAAGATAGCTCTGGACAAAGAGCGCAATCGCTGCTCTGAGCTGGAAGATGCCTTGCAGAAAATGAGAGCGGAGCTGCGATCTCTGAGAGAGGAAGCGCTCCAGTATAAGGATCAtggtaactctgcaaacccggCCGCAGCACGGCAGCAGATGATTATGTCTGCCATGGTGAAGTCTCCTGAGCACCAGCAGGGCCCGaccaacctggcaacctccaACTCAGAACGCAGGAAGGCGACTGCAACACCTGAGGagagaaggagggtCACTTTTGAAAAGTTTAGCCGCCGTTTGAAggacagtcagagagacagagagagggagagagagagggtggtgCACCACAACACCCCTCACCGCTTCACAGTGGGACTCAACATGAGAGCTGCCAAGTGTACTGTGTGCCTGGATACTGTGCACTTTGGTCGCCAGGCTGCTACCTGTCTCGaATGTCACGCTTTGTGCCACCCAAAAtgctccccctccctcccagcCACATGTGGCATGTCCAGCGACTGCTCCCTGCATTTGTCTGAGGGCCTGTGTCGGGACAAAGGCAGCTCCCAAGGCCAACAGCTCAAAGAGGCCAGCGGACACATGCACCTAGAGGGATGGATGAAACAGCCTAGGAATGGGAAGCGAGGCCAGGGCTGGGAGAGAAAATATATGGTCCTGGATGGGACTAAAGTGTCCATCTACGAGATAGAGCCCAGAGAAGATTCAGTGAAGCCACTGGAAGAGTTTGACCTGTGTATGTCAGATGGAGAGGTGGTTGTTCATGGAGCAGTGGGGGCATCTGAGCTACCCAACACAGCCAAGTCAGATATTCCCTACGTCCTGAAGCTGGAGTCCCGTTGTCACACCCCGTGCTGGCCTGGACAGTCAATTTGCTTCATGGCTCCCAGTTTCCCAGACAAACAGCGATGGGTGGCTGTCATGGAGTCCGTGGTGGCCGGGGCGCGAGCCTCGCGGGAGAAGGCTGAGGCCGACGCAAAGCTGCTCGGAAACTCTCTCCTAAAGCTGGAGGGAGACGATAGGCTGGATATTAACTGTACCCTCCCCCTCACAGATCAGATAGTTCTGGTGGGCTCTGAAGAGGGTCTGTACGCCCTGAATGTTATCAAGAATTCTCTGACTCACATCCCTGGCCTGGGATCAGTCTTTCAGATCCACATCATCAAAGAGCAGGAGAAACTGCTGATGATTGTTGggGACGAGAGGGCGTTGTGTCTGGTGGAGATTAAGAGAGTGAAGCAGTCCCTGGCCCAGTCCCACCTGCCCAGCCAGTCCGAACTGGCTCCCTACATCTTTGAGACGGTGAAGGGCTGCCATCTGTTTGCTGCTGGGAGAATAGACAACGGACCTTGTATATGTGCTGCTATGCCTAACAAGATAACCATTCTGCGCTACAACGACAATCTCAACAAATACTGCATTCGTAAGGAGATTGAAACTCTGGAGCCCTGCAGCTGCATCCACCTGACCAGCTACAGCATCATCATCGGCACCAACAAGTTCTACGAGATTGAGATGAAGCAGTTTGTGCTCGAGGAGTTCCTGGACAAGAACGACGTGTCACTAGCCTCAGCAGTGTTTGCAGCCTCGTCCCACAGTTTCCCAATCGCCATCATGCAGGTGGCCAGCAGCATGCAGAAGGAGGAATACCTGCTGTGTTTTCACGAGTTTGGAGTGTTTGTGGACACGTACGGACGAAGAAGTCGCACTGAGGAAATTAAGTGGAGCCGTCTGCCTCTGTCCTTTGCCTACAGAGAGCCCTACCTGTTTGTCACCTACTTCAACTCTCTGGACGTCATCGAGGTGCAGGGACACGCTGCTCTGGGTCCTACCGTGCTGGCTCACCTGGACATCCCCAACCCTCGCTACCTGGGCCCAGCCATCTCCTCCGGGGCCATCTACCTGGCCTCCTCCTACCAGAACAAACTGCGGGTCATCTGCTGTAAGGGAAGTCTGATCAGAGAGTCTGGAGAGCTGCAGAGGACCGGCTCCAGCAGAGGTAGTCCCAGTAAGCGAGGCCCCCCCACCTACACAGAGCACATCTCCAAGCGTTTGACCTCGGGCCCCGGCAGCCACGACGGCCTGCATCGGGAGCCCAGCACTCCCCATCGCTACCGGGAGGGCCGCACTGAGTTCAGACGGGACAAGTCTCCCGCCCGGCCGTTGGACAGGGAGAAGTCGCCCGGCAGAGTGCTTGACAGTCGCAGGGAGAGGTCACCTGGGAGATTCGGAGACAGCACCCGACTCCATGCGGGGTCTGTCCGAACACAGCTCGCCCCTGTTAACAAGGTGTGGGATCAGTCGTCGGTGTGAATCCAGTTCCGCGCTGCTCCTGACTGGATGGTCGAAGAGAAACTATGGGGAAACCATCGATCCACTCTTGagtgcaagcacacacacatgcacacaaacacatcgcTCAGGCTGAACGTCAGCCCCCATTGCCTGTACATAGTGCTCAGTGCATCAGTTCCTCGTTCGACAACACGTACACCTGCACTGGGAGACGTCTCCTGCGACAATCCTCTCTTTTCTGACACGTGCTTTCATGGGAGAAATCCCGCGGTAGATTTGGTGGCAGGGAACCTACGCTGATCTACAGGGTCAAGAGAATCTACTTTATGATACGTACTCAAAGTTGTAAATATATTGCCGTCTGAGTTTTTATAGATAAAAGGGAATAGTCGGCTGGAAAGCCAcgtctattttttttaaaaagagtttCTAAAGACGTTGCAGGGAGATTACTGATGTCGTTGGTTACGAAATTCAAAATCTCAACATTTCATTAGAATCCAAAGTTATCATTTtagggtttgtttttttctctgttcAGAGAATCAAACCGACATTTAATTGCGCACATAAATCCTGATGAGGGAGAGGTCCGAGGAGGCAACACTTTGCACATGAGATTGGATATGAACAGGAGTTAAAAAGCTCGTTCTTGTTACATGACCAGTCGTCTTTCTTTGGATCAAAATGTACGGTCCTCTTGACTCAATAGCCTTTGAAATATAATTACATTTGAATGCTTTATTGACAGTCGTCATCCGGCCATACTTTGTAAAAACAATTAGTAAGCAATGTTTTTGCTCCAAGTGTTCCTTGTGTTGTTTATAGCAAACCTAAGATCAAGAAGCACGcagctctgcctctgattggccgaCGCTGCCTCAGCTTGCTCTTAGCCCgccgccgccgctgctgctgctgctgctagttATGGTACAGATGTCCTGTTCCTGTGCAGTGATATGAAGTCTAGTATTCGTCAGGGGTTGTCACTTCCTAGTATTGTTTCTTTAGAGCCAGTAAGACCACCTCCATTCGTCACATCAGTGAGCATGACTAACTTAGAGCAGCACTTGTCGCTTTTTTTTCGATCTTGATTCTCTCTCTTGGTTGTTCTTTTCGGTCACGTATTCACTTGAATTTGCATTCAGTAAGTAGACGTTGATGTTAGACAGTAACTTAAACGATTTTCTTGATTTTTAGAGATGTATACCAGTACATGCATTAAACATGATTGAAGTGTCTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80536 lncRNA downstream 185124 7903693 ~ 7903912 (-) True G59972
TU80534 lncRNA downstream 186497 7902231 ~ 7902539 (-) True G59970
TU80515 lncRNA downstream 211831 7827141 ~ 7877205 (-) True G59951
TU80467 lncRNA downstream 349460 7727777 ~ 7739576 (-) False specc1la
TU80414 lncRNA downstream 474142 7610429 ~ 7614894 (-) True G59875
TU80643 lncRNA upstream 9128 8170385 ~ 8170606 (-) True G60064
TU80651 lncRNA upstream 39779 8201036 ~ 8201375 (-) True G60072
TU80652 lncRNA upstream 40236 8201493 ~ 8201743 (-) True G60073
TU80730 lncRNA upstream 137920 8299177 ~ 8301619 (-) True G60133
XR_005639527.1 lncRNA upstream 201503 8362760 ~ 8369854 (-) True LOC120560869
XM_039802093.1 mRNA downstream 149932 7932971 ~ 7939104 (-) False myl2b
XM_039802092.1 mRNA downstream 149967 7932971 ~ 7939069 (-) True myl2b
XM_039803272.1 mRNA downstream 158152 7924933 ~ 7930884 (-) True ppp1cc
XM_039803273.1 mRNA downstream 164470 7914857 ~ 7924566 (-) True pptc7a
XM_039803054.1 mRNA downstream 201611 7877399 ~ 7887425 (-) True anapc7
XM_039803059.1 mRNA upstream 52689 8213946 ~ 8234996 (-) True rab35b
XM_039803060.1 mRNA upstream 55040 8216297 ~ 8235009 (-) False rab35b
XM_039802741.1 mRNA upstream 74302 8235559 ~ 8272303 (-) True gcn1
XM_039802743.1 mRNA upstream 113664 8274921 ~ 8281269 (-) True vamp5
XM_039802742.1 mRNA upstream 113664 8274921 ~ 8281262 (-) False vamp5
TU80531 other downstream 201633 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 504517 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_243 other downstream 577745 7511221 ~ 7511291 (-) True trnag-ccc
TU80230 other downstream 1092180 6991203 ~ 6996856 (-) True G59739
TU80011 other downstream 1565362 6522759 ~ 6523674 (-) True G59563
TU80745 other upstream 239765 8401022 ~ 8402566 (-) True G60145
TU81433 other upstream 3027885 11189142 ~ 11189741 (-) True G60715
TU82089 other upstream 5427782 13589039 ~ 13589332 (-) True G61264
unassigned_transcript_252 other upstream 6777718 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 6783239 14944496 ~ 14944568 (-) True trnaa-agc_15