RNA id: XM_039803989.1


Basic Information

Item Value
RNA id XM_039803989.1
length 2478
RNA type mRNA
GC content 0.47
exon number 5
gene id mymk
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 35125559 ~ 35131747 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaacagaATCACTGAGTTGGAAAAAGAATCACCCCCCTCCTAAAAATGACTTGTAAACCCAACCAGGTGTAGTTAATCACCTTCTCAATAGCACACAAAGCCAATTATTGACTTTCAACTGTGATCAGCTGTGGTCATTCTGATTAGCTCAGCATGAAACAAGCTTTTCCTGAAGCATTTCAGTCCTTGGTAGTGCAACTGAAGAAAACAATCAACTATGGGGTGGCAAGGCATTGTCAAAAGATCTCCGGGATAAAGTTGTGGACAGGCACAAGTCAGGAGATGGATACAAAAAAATGTTCAAAGGCTTTATCAGTGCCTAGAAGCACAGTGAAGTCTATTATTAAGAAGTGGAAGGTATTTGGTACAACACAGACCCTCCCTGGGTCAGGACGTCGCTCCAAACTGGATGAAAGAGCCAGGAGGAAACTGGTCAGAGAGGCTACCAAGAGGCCTACAGCAACTCTGAAGCAGTTGCAGGAATTCATGACAAAGAGTGGTCATTGTGTGCATGTGACAACAATATCACAAATTCTCCACAAATGTGGCATGTATGGGAGGGGTGCAAGAAAAAAGCCACTCCTCAAGAAAGGCCACATGCAGTCACGACTGAGCTTTGCCAAAACGCACCTTGAAGATTCTAAGGCCacgtggaagaaggtgttatggtcAGATGAGACTAAAATTGAATTATTATTTGACCTCAACGCCAAACGATATGTCTGGCGAAAATCCAATACAGCTCACCATCCAAATAACATCATTCCTACAGTAAATCATGGAGCTCTGGGCGACTTTGATGAACCCCAGCGCTCCAGTATGACCATGTTTGGAGTGCTGACCATCGCTGTGAGGATCTACCAGGATCGCTGGGGCTACGGGATCTACTCTGGACCCATCGGATCAGCTGTCTTCATCATCACTGTCAAATGGCTGCAGAAGATGAAACAGCTGAGGGCGGTGTATCCAGAGAAGACCGTGTACACGCAGCAGGTCGGTCCAGGCTGCTGCTTCGGTGCTCTCGCTCTGATGCTGCGTTTCTACTTTGAGGAGTGGGACTACGCCTACGTCCACAGCTTCTACCATCTGTCTCTGGCGGTGTCCTTCATCCTGCTGCTGCCAAAGAAGAACCGCTATGCAGGGACGGGACGAAACGCGGCTAAACTCAGCTGGTTcactctctgctgctgtTCCATGTCCCCTGGTACTACTAAAGAGAAGACTGGTACTACTAAAGAGAAGACTGGTACTACTAAAGAGAAGACTGGTACTACTAAAGAGAAGACAGACAAgccgaagaagaagaagtcgTCTCGTACCGTGTGGACAATCCCCACAGAGAAGCCGTGGACACAACGCAGTAGCACCCCCATCCTGCCTCTTtacacccccccaccctccacaccTGTCAAAGGGACCAGCATCAGCAAGCTCAAAGAGATGAACGGCTGGAAGTGAACCCCAAAACGTAACTCACGTAAGAAGGACTTCATCCTGAAGAACAGGCAGAGATAGTGGTCGGCTAGGAGCGGGAAACAGGAAAATCACCAAATAACTGTCAGCCAAATGCTGATAAACTTGTATGTGGCTGGTAAGTTAATCTTCTTCAGCAGGAAACCAACCATCATGAGGACGTTCCTTTCTACTCCAGAAAATCATTGTTGGCTGGTAGAATATTTAAGGTCAACAGCGCTGGAATCCACCAGTAACTGTAGCTTGCAGATAAAGAAGCAAAAGGGCCCGAAAGTGGTTCTAAAATTTAAGGGCAAGAACAAAAGAGGAATCAGGCCTCCGGCGCCCTCAAAGACCCAATATGAACACAGCTGTCTGAAGCACTTGTCCAGAGCTGAGGACAGGCAGCACGCTAcgaaagaacacacacagaacgaacagggagacgGTGGCTGAGACAAACCAGTAAAACTGACTGGAAAATTTACGAGAAGAGCAAACAGGCAGATGGTTTATCTCTCCAAAATATATAAATTGTCTTTAGAAATGTTCCTCAGGGGAGACCTTTCCGTCTGCTCGCCTCGGTCTGTCcgtcccccctcctccttctctttcccGTCTCTCTCAGGGAAAGGAAGCACGCGGCTGAATTTGTTTTTGAGAATTACAAGACTGTAAAGCACATTTTACTGTTTTGATACGTCCTCAAAGTGCCAAATGTGTCATGTGGAGCGTCAGACGTTGGAGCAAGGGGAAGCGGCGGCCCAGACGTCAGTCTGTAACCCGACTGAAGCATCTTGATGTGTTTCTGGATCAGCAGGTGGACTCCTCTGTCTGTTAACTCTAGTTCACTGACCGAGCAGCTTTGGCTATGACTTCTGTCCCTAATGTGCACTGTAGACGTGTGATGTTTCTGGTGAAAACCTGTATCAATATATTGTTATTTATTGCAGCACGGAAGATTGTATATTCAGTATAGTGTTTGTTATTGATAATTTTGttatattttgaaaataaaatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89494 lncRNA upstream 125534 35000278 ~ 35002196 (+) True G66907
TU89403 lncRNA upstream 263040 34861499 ~ 34864690 (+) True G66832
TU89406 lncRNA upstream 298076 34828892 ~ 34829654 (+) True G66834
TU89399 lncRNA upstream 311403 34815589 ~ 34816327 (+) True G66830
TU89323 lncRNA upstream 618117 34508142 ~ 34509613 (+) True G66769
XR_005639572.1 lncRNA downstream 123914 35255661 ~ 35258072 (+) True LOC120561203
TU89602 lncRNA downstream 257029 35388776 ~ 35406557 (+) False G66997
TU89604 lncRNA downstream 274148 35405895 ~ 35417807 (+) True G66997
TU89791 lncRNA downstream 739676 35871423 ~ 35993376 (+) False G67152
TU89792 lncRNA downstream 739676 35871423 ~ 35877725 (+) False G67152
XM_039804547.1 mRNA upstream 68099 35046844 ~ 35059631 (+) True LOC120561428
XM_039804548.1 mRNA upstream 68099 35046844 ~ 35059631 (+) False LOC120561428
XM_039804549.1 mRNA upstream 68099 35046844 ~ 35059631 (+) False LOC120561428
XM_039804550.1 mRNA upstream 68099 35049301 ~ 35059631 (+) False LOC120561428
XM_039804036.1 mRNA upstream 175253 34951502 ~ 34952477 (+) True LOC120561072
XM_039804099.1 mRNA downstream 14003 35145750 ~ 35160654 (+) True slc2a8
XM_039804101.1 mRNA downstream 15792 35147539 ~ 35160654 (+) False slc2a8
XM_039804100.1 mRNA downstream 16115 35147862 ~ 35160654 (+) False slc2a8
XM_039803781.1 mRNA downstream 29836 35161583 ~ 35181996 (+) True LOC120560891
XM_039803782.1 mRNA downstream 29836 35161583 ~ 35181996 (+) False LOC120560891
TU89504 other upstream 68112 35046855 ~ 35059618 (+) False LOC120561428
TU89401 other upstream 263464 34861499 ~ 34864266 (+) False G66832
TU89402 other upstream 263464 34861499 ~ 34864266 (+) False G66832
TU89404 other upstream 263464 34861499 ~ 34864266 (+) False G66832
TU89395 other upstream 354030 34765946 ~ 34773700 (+) False LOC120561070
XR_005639497.1 other downstream 390918 35522665 ~ 35547463 (+) False LOC120560625
TU89783 other downstream 709127 35840874 ~ 35852056 (+) True G67146
TU89780 other downstream 709787 35841534 ~ 35854161 (+) False G67145
TU89779 other downstream 710331 35842078 ~ 35854161 (+) True G67145
TU89790 other downstream 739676 35871423 ~ 36023264 (+) False G67152

Expression Profile