RNA id: XM_039803998.1


Basic Information

Item Value
RNA id XM_039803998.1
length 1058
RNA type mRNA
GC content 0.47
exon number 7
gene id asgrl1
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 14454088 ~ 14456312 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTGTGTGATCTCATGGTCAGAGTCCAACCAGAGAGATTCAGAGAGCTTCTGATTCTTGATGACGTAATGGAGGCTCAGTATCACCGGTTTGCATCGTCTGATAACAGCTCTGTCCAGGAAGAGCACAAAACGACTGCCCAAACGGGTCTGAGGAGGATAGTGGTGTATGTCCTGTAtggagtgctgctgctgctgctgttaattCTGCTGATGGTCACTGGGATAAGATTCTCCCAGTTAAACAAGGGAATCACTGACGTCAAACTGAGCCTTGAGAGGATCAGCAATGGAAGGACAACTTCATCGTCCAGTTCAGGTCAGGAAATGGTTTCAGGTGCAACAACTATGCAGGAGGTCGTCTTACAGAAACTTGTCCCAGTTCAAGGAACATGCAGGGAAGGATGGGTGTCTTTCCAGAGGAGCTGCTACCTGCTATCCAGGACCGCCGTGACCTGGAGCAAAGCAGAGGAGCGGTGCCAAACACACGGAGCACACCTGGTGGTTCTGAACAACGCGGAGGAACTGGACTACATTTCAAAAGTAGTTGAAATCAGATATAACTATTGGATTGGACTTGTGGAGCGAGAACACGAGGGACACTGGAGCTGGGTGGATGGAACGGACTTCAATTCCACCCCAACTTTCTGGGATAAGGGTCAGCCTGACAACTGGGACTACAGAGAGAACGGAGAGGACTGTGGGCAGATTCACAGTTCTGCGATACGCAAACGCAAGCTGTGGAATGATGCAGACTGCAACCTGGCGTATCCATACATCTGTGAAACCAAGGCGTGATGTGAGAGACAGTGAACCTGTCCGAGCCACTGAACCCTCACCAACATGACAGGCCTGATATGTTGGAAAATAATGGCTCAAATTAAGACAGAAGGAAATGATGTTTTTGATATCAATGTATTAATTTTGAGAGTCACAAAAAGGGATAAAAGTTGCATATACAGTACGTGTGCGTGGCATTTGTTGGAGACAACAAAACACTAACTATGAATACAATGACACTTGTTGATTTTGAATAAAGACACACTCTTCTGCGTGTT

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82490 lncRNA downstream 30277 14417175 ~ 14423811 (-) True G61566
TU82488 lncRNA downstream 35183 14411397 ~ 14418905 (-) True G61564
TU82482 lncRNA downstream 66349 14387523 ~ 14387739 (-) True G61559
TU82283 lncRNA downstream 89762 14363723 ~ 14364326 (-) False si:ch73-138n13.1
TU82274 lncRNA downstream 140156 14313595 ~ 14313932 (-) True G61425
XR_005639560.1 lncRNA upstream 4614 14460926 ~ 14466354 (-) True LOC120561033
TU82509 lncRNA upstream 4679 14460991 ~ 14466330 (-) False LOC120561033
TU82515 lncRNA upstream 28930 14485242 ~ 14485537 (-) True G61586
XR_005639535.1 lncRNA upstream 97891 14554203 ~ 14556499 (-) True LOC120560922
XR_005639534.1 lncRNA upstream 102774 14559086 ~ 14559729 (-) True LOC120560921
XM_039804212.1 mRNA downstream 6073 14445463 ~ 14448015 (-) True LOC120561207
XM_039802545.1 mRNA downstream 54121 14392607 ~ 14399967 (-) True hnf1a
XM_039802546.1 mRNA downstream 54121 14392608 ~ 14399967 (-) False hnf1a
XM_039802777.1 mRNA downstream 77231 14374656 ~ 14376857 (-) True pop5
XM_039802775.1 mRNA downstream 79855 14365222 ~ 14374233 (-) True rnf10
XM_039802064.1 mRNA upstream 59487 14515799 ~ 14532759 (-) True LOC120559985
XM_039802065.1 mRNA upstream 59487 14515799 ~ 14528713 (-) False LOC120559985
XM_039804218.1 mRNA upstream 78956 14535268 ~ 14547863 (-) True qsox2
XM_039803814.1 mRNA upstream 109719 14566031 ~ 14580163 (-) False ddx31
XM_039803811.1 mRNA upstream 109719 14566031 ~ 14580163 (-) False ddx31
TU82089 other downstream 864756 13589039 ~ 13589332 (-) True G61264
TU81433 other downstream 3264347 11189142 ~ 11189741 (-) True G60715
TU80745 other downstream 6051522 8401022 ~ 8402566 (-) True G60145
TU80531 other downstream 6566685 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 6869569 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_252 other upstream 482663 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 488184 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_254 other upstream 492447 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_255 other upstream 495190 14951502 ~ 14951583 (-) True trnas-gcu
unassigned_transcript_256 other upstream 511367 14967679 ~ 14967760 (-) True trnas-gcu_1

Expression Profile