RNA id: XM_039804008.1


Basic Information

Item Value
RNA id XM_039804008.1
length 4386
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120561040
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 12474081 ~ 12501550 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCGACTACACCAAATATACTCTGCACGTCTGAGGTCTGAGCACACTTTGAAGCGCTAGCTAACTAACTTCGACTGGCTgcttttgagacattttattcCCTTTTTGCTTGAACAAAATGGCATCGTTCACCCGATACAGCACAAAAGAAGATACATCAGAGGAGGGGGAACTGGAAAGTGAAGACGATGGAGACTCAGGAGGAGAGAGTTTTCTCGCAGACGAAGAGGAATTTGTTCCAGATGAGGATTTTGATGATTACCAACAAGATGATGAAGAGCCTAGCACCTCTTCTGGAGGACAAGGTGGCAGCCCCCCTGGTGAAAAGTCTATCACCTCTGCTGCAGGACAAGATGCCAGCCCCCCTGCTGAAGAGCCTAGCACCTTACCTGCAGGAAAAGATGCCAGCCCCCCTGCTGAAGAGCCTAGCACCTCTCCTGCAGGAGAACATGTGAGGGCCGCTGCTGAAGATACTACCACCTCTGCTGCAGGACAAGATGCCAGCCTCTATGTTTCTACAGAAAGAGAGCAGCCCCCCCAGCATGGGAGAGCTCGTAGACGGACTAGACGACGATCTCCTTCTCCACCACACAGCAGGGCACAGGGATCCAGGTCCAAACGTGCACGACGATTATCAAGTGGCTGGACCAAAACCACATCCGGATCTCCTCGTAAGCCAAAACCAGTATACTCAGCCACTTCCTGGAAAACTGAGGAAGATCCTGATGTATGTCCAGAGCAAAGAAGGTTTGTCCCAGCAAGACCCCCCGGACATAAACTGAACCCGGACAAAACGTACACACCGATGGACCTTTTCAAACTGTTTTTCAGCAATGAAGCAGCTCTAACCATTTGTCATCACACAAATAAACAAGCTGCTAAAAACAttgcaaaaggaaaaaaatattcatgGACTAACATCACCATGGAGGAGTTTTTCAGGTATGTGGGACTGACTTTCTTTATAGCATTGGTGAAACTGAGTACGATCAGAGattactggaaaaaaaacacaatcttCAGTGTCCCATTTCCAGCCAATATCATGGTACGGGACAGGTATCAGGTGATATCTTGGAACATCCACATGAGTGATCCTGAGGAAGATGTTGAGAATGACAGAAAGAAAGGGACACCAGATCATGACCGCCTGTTTCGACTGAAGCCCCTCCTGGACACCATCAAAAATGCTTGCTTAGCATATTACCACCCCAGGCAGAACCTTGCGATTGACGAGAGGATGGTGGCGACAAAGGCCCATACTGGAATGACGCAACACATGAAAGCGAAGCCGATCAAGTGGGGTTTCAAGCTCTTTGTTTTGGCTGACAGCAGCAATGGCTACACTGTGGACTTTACTGTGTACACTGGAAAGTCACAGTTTGTCTCAGGCGTTGGACTTGCATATGACTCTGTGATGTCCCTGATGAACAAAGAATATCTGGGCAGTGGCTTTCATCTCTATGTGGAtaatttctacaccagtccaaaACTCTTCAAGGATCTGTTTAACCTGAATGTCGGAGCATGTGGCACATACAGAGGCAATAGAAAAGATGTTCCCCACACAGAATTGAATGTGCTGAAGAAAAATGCTCCTAGAGGCTCCATCAGGTGGATCCGTGAAGGCCCACTGGTTTTTGTGAAGTGGATGGACACACGTGAGGTCTCTATCTGCTCTACAATCCACCCGGCATTCTCTGGAAACACTGTGAAGAGGAGAGTCAAAACACGGGGTGGCGACTGGACCACCAAATGCTTTCCATGCCCAACACCTATCAGGGATTATAACAAGCACATGGGCGGTGTTGATATGTCTGACCAGCTGATACAGTATTACTCTGTACATCACAAGAGCATGCGCTGGTACCGGACCTTGTTCTTTCACTTCCTGGACATTGCAGCCACAAACAGCTACCTCCTCCACAAGGAGCTTTGCAGAGAGAAGCAGGAGGAACCCATGAGCCACAGGGACTTCCTGCAGGAGCTGACAGCCCAGTTGTGTGGTGTCACAGTTAAaacccctcctgcccagacacGCAGTAGCCACGTACCTGTAGCTATCGCTAAAATACTTGATGTAAGCAGGAAGGCCTCGTATGGACGCAGGCCCTGCGTAAACTGCAGACAGACCAGGAAGGCCAAACAGGCTACCCCCTGGAAGTGTAAGGAGTGTGATGTGGCCCTATGTGTCATTTCAGACAGGAACTGCTTTGAGGCATGGCACAGCTAACGTTTTGGACAAAAAGGAACTGGGACTTGACTAAAAGAATGTAAACAGTCTTTAATCTGTGTTTGCTACAATGTTGGTTTTTCCCCACTGATCACCAAGGCCctagtctggctcaacggatGTACATTGTGGTAGAGGTTTGGCAAACTAAAAAGTAGCCTAGATTGGGAACCTGTGCCATCACGGCACTAAATCCAACTTGTATTGCAGGCAGTGTTCGCCAGTAGCGTTACTAGTTTAACCTCTTCTCAATAGCGTCGCTGTTTTCTGAATCAAATAGCTTTTCATTAGCATAGCTCTGTTATTGATCAAGTAGCGCCGTAGCATCCACACAAGTTTGTACATTTCCCCAAGCTTTTCTGAAGCTCAAACACACTGGAgctatcttaaaataaaaataaaactgtgctGCCGATAAGGAAATGAGGTGCATTATTGCCACCATGTGATCTTGAATCACTACACTCTCATTATGGGCTCTCTCATTGCTCTCACTCAGGAGCGGCTGAGATAAGTGCGACACCTAGTGGTACATTTTGGAACACTGATCCAGTCCGGTGTTTGGCTTGATATCAAACCAGTATTAATTTTTTAACACCAGCCCTAATTGATCCTTCGCTAAGCCCCGCcctccttagttactgttgctacgcctGACAAGCTTTGGTGCCTGGCACGTCTATTATACTATGTATGCACCGGTGTCAGACATTCCCAAGGAGATAATTAGTAATTTTTGGCAAACAGGTGAAATATCTGAGAGAGCAAGACAAAGGGGACTGCAGTATGCATTCGAGGGATGTATCCATGACATAATATGCAACCGATTAGAGAATAATTTCATCAAAATTGAAGCTAAATCTATAGGTCATGCCTCATACGCTGACTATTCAAATGGAATCACACACATTGAGGAACAGCTATGTTCATGCACAGCAGGGGAAGTgaaatttgaaaataatctaataattATAAATCAAACAGCTTATCCATAAATCTTGTGGAATAAACACAAGACATTAGCCTGAACACTTTGCAATGATAACATTCTACTGCTTATATTTTTAGCGATTAACAAAATcctgaaatatattttaaagtatGTCAGTGAGCCTCAGTCTTGCCTTTAATCATTTTTAGGACAATTCCGGTTAACcgttaacatttagggaccctcattaggctaccgttgaagtgtggtgatattttgagccttttatTTGAGCCGATTTTTGTCTTTACTTTCCCTGTTtcccccgaatactagcgttgtaagctaatcagcagtccacgctagcttgtttcaagctacaaacacattagattagcatgaaaacatgtcccagagagcgatcgagtgggtacacatctgttatccCCTAGGTttattttgcgccggaattgtccttttattTTACGTTCAAATATATGCATTATGAACAAAGAACATAATTATTTCCAAGCAATGCTATGCTgagttaactagctagctaacattagcgtgTTCTTGCCTTGGAGCAAACGTACGTAGGTGTTTCTGTTAATCTTTTGACATTTAACTAGTTGTGAATGGGGCCTCCCACACTGCTTGATCCACGCCCGGCATTTCTCCCCTTGGGTTTTAGGTTTCgggaagggaaaaaattccaccacCCTGTCCAAACTTTTAGGATAACGGGTATCAGATTTGCACAATCCATACACACAACGCTTCGGCATGTTTCCCTCACTCGAACGCTTGACAGACCTCCCGCACCGAGTTATGGTTGTTAAGCCACCATTGGCCTGTGGCGGTTTTCGGGCGTGGAATAAAGCCCCGCCCAGGACagttgtgattgttttaaagaaataaacaacctgattgtttgtttgtttttccgaTCCCAGTATAGAtaggtggtgtagccagactttaCTACAGCACTGACACAGCGACGTAGATAGGTttgacaatgcgagactaccaagGCCTAGAAAAACAAATCTCAAAAGCCAAAAGTCTTGTTCACTATTGTTTtatgtatgatttttaaatgaatatctgtgatttaactttttattttgtcttcatGATCATATAACTATACACTCATGGGACAGCATACATATTCTGACAGCCcagtttttctttaaataaaatgtatataaccTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81651 lncRNA upstream 485348 11988167 ~ 11988733 (+) True G60901
TU81646 lncRNA upstream 552692 11921031 ~ 11921389 (+) True G60896
TU81644 lncRNA upstream 567212 11906443 ~ 11906869 (+) True G60894
TU81643 lncRNA upstream 568167 11905646 ~ 11905914 (+) True G60893
TU81642 lncRNA upstream 574131 11899723 ~ 11899950 (+) True G60892
TU81831 lncRNA downstream 102206 12603756 ~ 12604210 (+) True G61050
TU81833 lncRNA downstream 106094 12607644 ~ 12608057 (+) True G61052
TU81834 lncRNA downstream 107554 12609104 ~ 12609458 (+) True G61053
TU81853 lncRNA downstream 137058 12638608 ~ 12638860 (+) True G61067
TU81877 lncRNA downstream 178159 12679709 ~ 12682068 (+) True G61091
XM_039802658.1 mRNA upstream 315383 12121425 ~ 12158698 (+) True dpp7
XM_039804627.1 mRNA upstream 625941 11837758 ~ 11848140 (+) False LOC120561470
XM_039804630.1 mRNA upstream 625941 11838184 ~ 11848140 (+) False LOC120561470
XM_039804626.1 mRNA upstream 625941 11841680 ~ 11848140 (+) True LOC120561470
XM_039804629.1 mRNA upstream 625941 11841680 ~ 11848140 (+) False LOC120561470
XM_039803770.1 mRNA downstream 239316 12740866 ~ 12748536 (+) True fgf17
XM_039803771.1 mRNA downstream 239316 12740866 ~ 12748536 (+) False fgf17
XM_039802808.1 mRNA downstream 250960 12752510 ~ 12794431 (+) False fkbp15b
XM_039802810.1 mRNA downstream 253149 12754699 ~ 12794431 (+) False fkbp15b
XM_039802807.1 mRNA downstream 253150 12754700 ~ 12794431 (+) False fkbp15b
TU81647 other upstream 547480 11926183 ~ 11926601 (+) True G60897
XR_005639564.1 other upstream 1721641 10748116 ~ 10752440 (+) True LOC120561144
XR_005639563.1 other upstream 1721641 10748116 ~ 10752440 (+) False LOC120561144
XR_005639565.1 other upstream 1721641 10748116 ~ 10752440 (+) False LOC120561144
XR_005639562.1 other upstream 1727133 10726446 ~ 10746948 (+) False LOC120561142
TU81938 other downstream 419597 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 419597 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 1605933 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 1639892 14141442 ~ 14142050 (+) True G61338
TU82219 other downstream 1781867 14283417 ~ 14283871 (+) True G61383

Expression Profile