RNA id: XM_039804011.1



Basic Information


Item Value
RNA id XM_039804011.1
length 743
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC120561043
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 23352950 ~ 23354264 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTAGACTCACACAACTTCAACTCCAGACACATTTATTGGTACTCAAATTTGGTAAgatgatttatttatgtttagGCAAGTCTAAAAAATAGATCAACCACAAGACTCCTTAAATACCTCCTGCCTAACAACAGTGTCTCTCTCCAGCAGAGCGCAGGAAAACGACAGAAAAGGCACCTGAAAACTCAATAAAGAAGCAACAACTTAGTTAAATGATCATGAATGTGAAGAAGCAGCTGTGGTCCCTGGCCTGCATGGTCCTGCCTGGTGTGGGATTTGCGATGACCTGCACTGGGTCCTACCTGGTGTACCTGCAGATAACGTATGAGTACTCTATGAGGGTCGTCCCTGCCTACATCATGATTGTGTTGGGCATCCTGGCTGTGTTCATTGGAGTCTTCTGGTCTAACTGCCAAAGCATGAAGAGCAAGATGTACCTGAGAGGAGGACATGAACAGCACACCCAGGTCTACACTATTGAAAGACCGAGCTCATTCCCTCCATCGTACGAGGAATGCCATGGCAGCCAGGGGTGTCCTGGAACAGCCTCTGAGTCTGTTGTCGTGGTTGACGGGGTGGATGTGGTGATGAGCTTCGCTCCTCCTCTGTACAGCCAGGACAGCTCGGATGCTCCGGACTGCACATGGAGCTGGGAGCAGCCTCCTCGGTACAGTCAGGTGGAGCATATTCAGCAGGGAGAGGTGGACGTAGAGGAGCGGAGGGAGGCCTTGACCGGACACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85721 lncRNA upstream 71841 23274920 ~ 23281109 (+) True G63976
XR_005639470.1 lncRNA upstream 107582 23219850 ~ 23245368 (+) True LOC120560300
TU85631 lncRNA upstream 364910 22987181 ~ 22988040 (+) True G63914
TU85584 lncRNA upstream 446984 22904035 ~ 22905966 (+) True G63872
TU85491 lncRNA upstream 1202826 22131884 ~ 22150124 (+) True G63792
TU85782 lncRNA downstream 76426 23430690 ~ 23432473 (+) True G64026
TU85783 lncRNA downstream 77217 23431481 ~ 23443313 (+) False LOC120560908
XR_005639533.1 lncRNA downstream 80794 23435058 ~ 23442981 (+) True LOC120560908
TU85820 lncRNA downstream 171383 23525647 ~ 23562232 (+) False LOC120560905
TU85900 lncRNA downstream 380560 23734824 ~ 23735293 (+) True G64127
XM_039802627.1 mRNA upstream 22402 23283079 ~ 23330548 (+) True LOC120560302
XM_039802628.1 mRNA upstream 22402 23283080 ~ 23330548 (+) False LOC120560302
XM_039802630.1 mRNA upstream 22402 23283081 ~ 23330548 (+) False LOC120560302
XM_039802625.1 mRNA upstream 79248 23257261 ~ 23273702 (+) True ndufaf2
XM_039803246.1 mRNA upstream 461931 22884588 ~ 22891019 (+) True elac1
XM_039803798.1 mRNA downstream 53952 23408216 ~ 23487506 (+) True dock8
XM_039803796.1 mRNA downstream 133703 23487967 ~ 23562285 (+) True LOC120560905
XM_039803799.1 mRNA downstream 350138 23704402 ~ 23722529 (+) True ercc6l2
XM_039803800.1 mRNA downstream 352013 23706277 ~ 23722529 (+) False ercc6l2
XM_039803178.1 mRNA downstream 400061 23754325 ~ 23904577 (+) False ipo11
TU85622 other upstream 422745 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 1754151 21588876 ~ 21598799 (+) False LOC120560787
TU85087 other upstream 2675034 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 2864112 20477812 ~ 20488838 (+) False wdr31
TU85875 other downstream 338398 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 1469454 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 1469455 24823719 ~ 24834620 (+) False cdc14b
TU86491 other downstream 2330708 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 2560118 25914382 ~ 25915529 (+) False LOC120560031

Expression Profile