RNA id: XM_039804031.1


Basic Information

Item Value
RNA id XM_039804031.1
length 2027
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC120561065
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 31456500 ~ 31461444 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCATTGTTCATCGTGGGCACCAACCCTTCTATCAACATGAAGGAGAGCAGGCAAAGTGATGTgagctctttgtcttcctcttctgAAGAGGATGAGCCTTCTACCACCAGGCAGCGAGTACGAAGGGGTGAGAgcccttcctcttcatcctctgaaGACAAGCAGCCTACTACTGCAACGCAGCAGCAAGCATGGAGGGGTGAGAGCCCTTCATTGTCATCTTCTGAAGATGACCAGCGTTGTGCCACCAGGCTGCTAGTACGAAGGTTTGAGAGCCCGtcctcttcatcctctgaaGACAAGCAGCCTACTACTCGGAGGCGGCAGCAAGCATGGAGGGGTGAGAGCCCTTCGTCGTCATCTTCTGAAGATGACCAGCGTTGTACCACCAGGCAGCAAGTGCGAAGGGATGTGAGCTCTTTGTTCATCGTGGGCACCAAACCTTCTACCATCACGAAGGAGAGCAGGCAAAGGAGAGAgagctctttgtcttcctcttctgAAGAGGATGAGCCTTCTACCACCAGGCAGCGAGTACGAAGGTTTGAGAGCccgtcctcttcttcctctgaaGACAAGCAGCCTACTACTCGGAGGCGGCAGCAAGCATGGAGGGGTGAGAGCCCTTCGTTGTCATCTTCTGAAGATGACCAGCGCTCCACCACCAGGCAGCAAGTGCGAAGGGATGTgagctctttgtcttcctcttctgAAGAGGATGAGCCTTCTACCACCAGGCAGCGAGTACAAAGGTTTGAGAgcccttcctcttcatcctctgaaGACAAGCAGCCTAATACTCGGAGGCGGCAGCAAGCATGGAGGGGTGAGAGCCCTTCGTTGTCATCTTCTGAAGATGACCAGCGTTGTGCCACCAGGCTGCTAGTACGAAGGGACGTGAGCTCTTTGTTCATCGTGGGCACCAACCCTTCTACCGTCATGAAGGAGAGCAGGCAAAGGAGAGAgagctctttgtcttcctcttctgAAGAGGATGAGCCTTCTACCACCAGGCAGCGAGTACGAAGGTTTGAGAgcccttcctcttcatcctctgaaGACAGTCAGCCTACTACTCGGAAGCGGCAGCAAGCATGGAGGGCTGAGAGCACTTTGTCGTCATCTTCTGAAGACGACGAGCCTTCTACCACAAGGAGGCAGCAACAACAAAGTCCTTTGTCCTTCGTAGACATCAACCTTCCTACCACCTTTAGGCAGAATGGAGGAATTGGTGAGAACCATTTGCCCTGCATTGACATTGACCAGCCTACCATCTGGTGGGAGCACGTACGAAGGGGTGAGAGACCTTTGTTTCGTGGAGACTTGAACCCTTCAAACACCTTGAGACAGGACGGACGAAGTGGTGACAGCCCTTCCTCTACATCTTCGTCTTCTGAAGATGACGAGCCCTTTACCACAAGGAGGCAGCAAGAAAGAAGGCCTAATAGCCATTTAGCTATCTATCTGAGTGCGAGAAAGGAGAGGGAGATCATTGAAAGAGAAAAGCAGCGTTTGGAGGAGGagggtttaaaaagagaaagagagaggtgtgaagagatgaagagaaagaaccaggagaaggagaggaaaacgTTTGGTCTGCGTTCAAGAATATACATTTGGTGGCTCAATCGCAAGATAAAACGCATTGCCAGGGACATCCAATCGACCTTTGTGGATGAGTGCTACCTCCTGCGTCATGATCCCCTCAGAAATCCAgagaaaatggcagaaaaagaACGGCTGCTTGACCGAAGGAGGGAGCTGGTCCTgtacaaacacagacaagaaTTTAAGGTGGAGAGGGAAGTGAGGAAGCAAAAACTGAAGGTAGAGAGGAAGGAAATGAATGCGAAGAAGATGGAGAATATCTCTGAGTTATGCAGCAACTCAGAAAGTATGTTAAATCTTCAAACGGGCAAATGCCAGTACCAATTCCAGTCAGCGCCCCTGCTACTCATCCTGCTCCATCATCTGCCTTCAGATGCCAGTCTGACTTTCCTCTCCCTGCTGGATTGTTCCTGA

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88421 lncRNA upstream 38240 31409955 ~ 31418260 (+) True G66107
TU88405 lncRNA upstream 47344 31351198 ~ 31409156 (+) False G66092
TU88404 lncRNA upstream 47344 31403719 ~ 31409156 (+) True G66092
TU88374 lncRNA upstream 138026 31317576 ~ 31318474 (+) True G66069
TU88375 lncRNA upstream 138164 31317576 ~ 31318336 (+) False G66069
TU88467 lncRNA downstream 354 31461798 ~ 31510356 (+) True G66117
XR_005639425.1 lncRNA downstream 17057 31478501 ~ 31485001 (+) True LOC120560111
XR_005639426.1 lncRNA downstream 17057 31478501 ~ 31485001 (+) False LOC120560111
TU88479 lncRNA downstream 297744 31759188 ~ 31763725 (+) True LOC120561307
XR_005639580.1 lncRNA downstream 301542 31762986 ~ 31763773 (+) False LOC120561307
XM_039803436.1 mRNA upstream 140078 31315299 ~ 31316422 (+) True LOC120560681
XM_039803819.1 mRNA upstream 156055 31273898 ~ 31300445 (+) True hs3st1l2
XM_039803820.1 mRNA upstream 156055 31297404 ~ 31300445 (+) False hs3st1l2
XM_039802031.1 mRNA upstream 215460 31237268 ~ 31241040 (+) True LOC120559964
XM_039804654.1 mRNA upstream 327740 31126860 ~ 31128760 (+) True LOC120561480
XM_039802281.1 mRNA downstream 23619 31485063 ~ 31489526 (+) True LOC120560109
XM_039802283.1 mRNA downstream 23619 31485063 ~ 31489526 (+) False LOC120560109
XM_039803521.1 mRNA downstream 51864 31513308 ~ 31565163 (+) True LOC120560726
XM_039803081.1 mRNA downstream 108598 31570042 ~ 31660267 (+) True dapk1
XM_039804358.1 mRNA downstream 209081 31670525 ~ 31675115 (+) True ctsla
TU88223 other upstream 570335 30857580 ~ 30886165 (+) False LOC120561064
TU88162 other upstream 878341 30574086 ~ 30578159 (+) True G65899
TU88039 other upstream 1204981 30247983 ~ 30251519 (+) True LOC120560820
TU88040 other upstream 1206232 30247939 ~ 30250268 (+) False LOC120560820
TU88038 other upstream 1206260 30246887 ~ 30250240 (+) False LOC120560820
XR_005639593.1 other downstream 348188 31809632 ~ 31810279 (+) False dmrt3a
TU88617 other downstream 664849 32126293 ~ 32136966 (+) True G66231
TU88642 other downstream 861063 32322507 ~ 32329990 (+) True G66256
TU88651 other downstream 903416 32364860 ~ 32369984 (+) True G66263
unassigned_transcript_266 other downstream 1110244 32571688 ~ 32571759 (+) True trnap-ugg

Expression Profile