RNA id: XM_039804035.1


Basic Information

Item Value
RNA id XM_039804035.1
length 1564
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120561071
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 34885538 ~ 34895629 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAccagaggtggaaggggaggaggagggttgcatATGGAGCTGTCAGTGTTGGTGCTGTTGGCCCTGCTGGCTCTGTCCTCAGCCAGTCCTGTGGACGTCTGGAACAACACAGAGCAGAGAAATGAAAGAGTTCCTAAGATCACAGCTAACCAATCGACAAATCATGCTATTAAGGCAAAGAGACATGTTATTTTCAAAGGGATTGGGAAAAACGTGGACTGGTCCTCCTCACTCAAGGTTGGTCAAACCAACCTGGAATGGCAGACCTTTGATGACTCTCTCCCCAACGGAGCAGTTTCAATCTACAACGAATATGTTGGACGCACCGACTACGTTTGCAAATATAGGCGTGCGGCCGGCTTTTATAACCCTTACAAGGGTCCTTACTGCTTCTACCCCTATGGAGAGAAAGAGTTCCATGAATCCCCATTTGAGATCCTGGTAAACAAAGACAACTTTGAGTTTATAGAATGGAAGGATGACTCTGACGGATCAGTGCCTCAGAATGCAGTCGAGACCAGGCCCGGCAGCAACATATATGTTGGAAAGAACAAGTATGGTCTTGGGAAGGTAGATGTTAAAAATCCGGCCTTCTACCTTCCGTGGAAAGGTTCTGAGTATAAGTACAAGAGCTACCAGGTCCTGACCGTTAACAAAGATGTAATCAGCGAGGCCATATCTGATGTCACGTATAAGACTGAGGGGGTTAATGTCGTTAAGTATCCTCCAGAGACCTTGGAAACACATGTCCTGACCAACAATGATCGCCAGGAACTGACACAGACCATTACCCTCTCAAAGACAACCCAAAAGGAGCAAAGGTGGGACGTCAGCTTTTCGTTAACAACAGGCGCTAAGACTACCATCACTGCTGGAATCCCCTTTGTCGTCGAAGGAAAAATCGACGTTAGCGTTGAAATTACCCTCCAGTACACCCAGAGGGCCACTTTTACCGAGTCGATCACCCACACTGTTTCTGTTTTGGACAAAATACCACCAAACCACTCCTGCCGTGCCAGTATGGTGGGATATAAGTACAGGACAGACATCCCATACACTGCACGCCTTAGCCGCACCTACAGAAATGGGGAGGCCAGATGGACATCCATCTCTGGGACCTACAGCAGCGTCCAAATGGGAGAACTCCAGGTTCTGGTGAATAGCTGTAAACCTGTATCTGATCCCACACTACTTCTGAATCGTCCGGCATGTTTTTTAATGgcttcagcaactgcatggaggagtgGGGACAAAACTGTCGACACATCCACATGATAAGAGCCTTCCGTGGTCGGCCATGACAGTTTTGTtctcattacttagaattcctcacgggggcgacaaactacgcactatagctttaaagagaATAATTAAAGATGCTCTTGAGATAACATATTGAATGTCCTTCACATTGTAATGAAAAGCTAAAAATAAACTATATGCTTTAACATATTTAGTACTTGGCATTTACCTTTTTCAAAGCAAAGAATGAAATGTATGAAAAAGTTGATTTAATATTTCATtgtttcaaataaaataaacgtGCATGCAAACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89403 lncRNA upstream 20848 34861499 ~ 34864690 (+) True G66832
TU89406 lncRNA upstream 55884 34828892 ~ 34829654 (+) True G66834
TU89399 lncRNA upstream 69211 34815589 ~ 34816327 (+) True G66830
TU89323 lncRNA upstream 375925 34508142 ~ 34509613 (+) True G66769
TU89226 lncRNA upstream 398787 34486538 ~ 34486751 (+) True G66695
TU89494 lncRNA downstream 104649 35000278 ~ 35002196 (+) True G66907
XR_005639572.1 lncRNA downstream 360032 35255661 ~ 35258072 (+) True LOC120561203
TU89602 lncRNA downstream 493147 35388776 ~ 35406557 (+) False G66997
TU89604 lncRNA downstream 510266 35405895 ~ 35417807 (+) True G66997
TU89791 lncRNA downstream 975794 35871423 ~ 35993376 (+) False G67152
XM_039802045.1 mRNA upstream 71043 34809084 ~ 34814495 (+) True tor2a
XM_039802732.1 mRNA upstream 79591 34774749 ~ 34805947 (+) False sh2d3cb
XM_039802731.1 mRNA upstream 79591 34781399 ~ 34805947 (+) True sh2d3cb
XM_039804034.1 mRNA upstream 111732 34765930 ~ 34773806 (+) True LOC120561070
XM_039802646.1 mRNA upstream 292822 34588133 ~ 34592716 (+) True LOC120560310
XM_039804036.1 mRNA downstream 55873 34951502 ~ 34952477 (+) True LOC120561072
XM_039804547.1 mRNA downstream 151215 35046844 ~ 35059631 (+) True LOC120561428
XM_039804548.1 mRNA downstream 151215 35046844 ~ 35059631 (+) False LOC120561428
XM_039804549.1 mRNA downstream 151215 35046844 ~ 35059631 (+) False LOC120561428
XM_039804550.1 mRNA downstream 153672 35049301 ~ 35059631 (+) False LOC120561428
TU89401 other upstream 21272 34861499 ~ 34864266 (+) False G66832
TU89402 other upstream 21272 34861499 ~ 34864266 (+) False G66832
TU89404 other upstream 21272 34861499 ~ 34864266 (+) False G66832
TU89395 other upstream 111838 34765946 ~ 34773700 (+) False LOC120561070
XR_005639528.1 other upstream 358133 34514010 ~ 34527405 (+) False cfap157
TU89504 other downstream 151226 35046855 ~ 35059618 (+) False LOC120561428
XR_005639497.1 other downstream 627036 35522665 ~ 35547463 (+) False LOC120560625
TU89783 other downstream 945245 35840874 ~ 35852056 (+) True G67146
TU89780 other downstream 945905 35841534 ~ 35854161 (+) False G67145
TU89779 other downstream 946449 35842078 ~ 35854161 (+) True G67145

Expression Profile