RNA id: XM_039804076.1


Basic Information

Item Value
RNA id XM_039804076.1
length 3812
RNA type mRNA
GC content 0.52
exon number 11
gene id galnt9
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4760116 ~ 4866975 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACCGTTAACCTTCGCATTACGGATCAAATAGCAAAAATCTGttaacacatgcacgcacagttGCATTTTCACAGTTGACTAGCTGAGGCGGGGGGAAGGCTGCTCTACGAAGTGGAAGTAGTAGCTGCTTTCAGAGTCGTGCTGTTGATTCGATCCTGCGAGCCTAAATAACACAGCTCGTGAATATTCATGATCGAGCCTGTGGACGTCAGGACGCAGCGGCGGCTCGGCTCTCCCTCCCCGGCAGAGAGAGCTGGCGAGActggggaggagagaggagagagacatcatgcgAGAGCCCGGCTGCATCTCTCCCGCCGCATCTCAGGGCAAATCTGCTCTCAACTCACCGCCGACACGGGAAACAACAAGGGACTGAcgaaacaaactaaaaaaaaagggaaagagagaaaaagacagagagagagagagagagagagagagagagagagagagagagagagagagagagcaacgcCGCCTTGTTTCAGAAACTAGCACACATTCTCTGGACATAAGCTCCTTGGGTTTCTGTTCGCAGAGCGGGACGCatcgagagagagagcacaacGCACTTGAAAAGGGAGATGCCACAGCGAAGCAGTGGTAGCGGGAGGATGCTTCGATGCGGGCGGTTATTGCAGCGCATCTCCTGTAAGATGGACGAGACATATCGGGGCTGAGGAACTGGCTGCTTATCGCGTTGGCGAAGGAAAGGTGGTTTGCAAGTGCCGCGGGCTGTTTTAGAGGATGAATGCCTTCCCTGGCGGCAGTTGTCGCTCGTGATATGTAGCTCAAACGACGACAGAGTGCGTGCAGCTGTTTCTCGGCTAGTGAAGCTCCATAAAGAATAACCCATCTCTCCCCGGCTGGAGCCGAGCGCCGTGGCCGCCAGCAGCCTCCCCCCCACCTCGGCTCCCAGTGTGACGGGTGCGATGCCCCAACTAAAAAAGTGAGCGCAGCCTCGCgagctgtccgtggtgctgaacgGATCCGTCAGCTCCTCGGGTCTCCACGAGTTgaccttctctctccccccccccctcctgtaAACAGTAAGGTGGTAAAGCAGGCCACCGCACATGGACAGCTGCTGGGCTTGACTGTGTCAGCCGGACAATATTCTCTTTCATGGCTGTGGCACGCAAAATCAAAACTTTGCTGACCGTCAACATTTTTGTGTTCGTGGGGATTATCCTGTTCTCGGTCTACTGCAGGATCCAGGACCGATCCGAGGAGCTCATCCAGATAGGGCGTATGTCTGACCAGAGGCTGCGAGCCAGGAATGGCAAAGTTTCCAACTCGGTGGACAGGCAGTCTATTCTCCAGAGGTTGGAGAGGCTGGAAGATGTGGTCTACAATCAGCTTAACGGTTTGGCGAAGCCCATGGGGCTAGTTGAGGGACCCGGAGGCCTTGGCCAGGGGGGAGCTGCTGCCACTCTAGGAGAGGACAGCCATGATGCCGAGGGGAAATACGAGGAGTACGGCTACAACGCTCAGCTCAGTGACCGCATCTCCCTGGACAGGAGCATCCCCGACTACAGGCCTAAAAAGTGTAAGCAGCTGACGTACGCAGAGGACCTTCCCCAGATCTCTGTGGTCTTCATCTTCGTGAACGAGGCCCTGTCAGTGATCCTGCGCTCCGTCCACAGCGTGGTCAACCACACACCCGCACACATGCTCAAGGAGATCATCCTGGTGGACGACAACAGTGACAGCGTGGAGCTGAAATACAACTTGGACCAGTATGTGAACAAACGCTACCCAGGCCTGGTAAAGATCGTGAGGAACAGCAAGCGGGAGGGCCTGATCCGAGCCAGAATACACGGCTGGAACGCGGCCACGGCTCCTGTCGTCGGCTTCTTTGATGCCCACGTCGAGTTTAACACTGGCTGGGCTGAACCTATTCTGACCCGGATGAAGGAGGATCACACCCGCATCATCCTGCCCGCCATAGACAACATCAAGTACAACACGTTTGAGGTGCAGCAGTACGCCAACGCCGCCCATGGCTACAACTGGGGGCTGTGGTGTATGTACATCATCCCTCCACAGGAGTGGCTGGACAAGGGCGATGAGACGGCCCCTATCAGAACTCCAGCTATGATCGGCTGCTCCTTTGTGGTTGACCGGGAATACTTTGGCGAGATTGGTCTGCTGGATCCTGGCATGGAGGTCTACGGAGGCGAGAACATCGAGCTCGGCATGCGGGTGTGGCAGTGTGGAGGGAGTATGGAAGTCCTGCCATGTGCCAGAGTGGCTCACATCGAGCGCACCAAGAAGCCCTACAACAATGACATAGATTATTACGCTAAGCGCAATGCCCTGCGGGCCGCCGAGGTGTGGATGGATGAATACAAATCCCACGTCTACATGGCCTGGAACATTCCCATGAATAACCCTGGGGTTGATTTCGGGGATGTCTCTGAGCGCTTGGCCTTAAGGAAAAGGCTGCAATGTCGGAGTTTTCGCTGGTACCTTGAACACGTCTACCCAGAGATGCGGATCTACAACAACACCATCACATATGGCGAGGTGAGGAACAGCAAAGCTAGCGGCTACTGCCTGGACCAGGGCGCTGAGGACGACGACAAAGCCATCCTCTACCCCTGCCACGGCATGTCCTCCCAGCTTGCCCGCTACGCTAACGAGGGGCTTCTCCAGCTAGGACCCCTGGGGTCGACCACCTTCCTGCCTGAcacaaaatgccttgttgatgatGGCAGAGGACGCACTCCTAGACTTAAAAAATGTGACGCTGTTTCAAGGAAGTCCCAGAGGCTTTGGGACTTTACACAGAATGGCCCAATCATCAGCAGGGACACCGGTCGATGCTTGGAGGTAGAAATGTCCAAAGATGCTAACTTTGGCCTTCGCCTGGTGGTCCAGAGATGCTCTGGTCAGAAATGGATGATACGAAACTGGATTAAGCATCCAAGGCATTAAagctagaaagaaaaaaatctctgaGACAGTTTGGGCAGTGTTTCAAGTTTCGCAGTTGGATCTCAAACTGTGAACAGTTCAGAAAGGAGCAGAAACTGGTGCTGCTAGTGTGTGCTATTTCACACTACAGACTGCACAGCACACTTAGCTTCCCTCAGGCCACAGAGCTTTCCAACACTGAGTATTAAAGAAGAATCTGATCAATTCATGTGTTCCACTGAGCTGCACGTTCACAGAGACCTTATGGCAGTCAGAAATGGCCCACATTTCTGACATTCAGCTACATGTATAGAACAGCGTAACGAGACATCTGAGTGTAGCCCCTGAAGTTGGTTCAAGATCCTAGTAATTCTTTTGTTTCTACTGTAAAACTATCAGATTTGTGGAGATGAgaaagagtgtgtgagtgttctGAGTGCATCTGAGCTAATCAAAATATATGATTGGGTCAGTTGCCACATCAAAGTGATTATTTTGGGCtgtgatttggaaaaattgctTTGGACATATTGTGCTGCACTGGCAAGACATGTAATAGGCTTCAAAGGGGCTGCCCATCATCTGTCCGGGAGGCATTTCACCTGCTACTGTGCTACCACACAGACTAcagttctttctttctttggacTGTATTGCTCACTGAGGACAGGAGCAATCATGTgccttttttctcatttttctgtCTAATCTGACCAGGGAATGTCAGTCCCAAAAGCATGTACAAAATTATTTGGaaattattaatatataaaacaatgtaTAAAACAGTCTAATGATAGTaatatattgtaaaaagtgaaacATTGATATCCATCCTCTGATAACAGTTAggataataaaatcatttttatGATGAGCAACCTC

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79654 lncRNA downstream 18985 4738049 ~ 4741131 (-) True G59290
TU79627 lncRNA downstream 55843 4635908 ~ 4704273 (-) True G59268
TU79595 lncRNA downstream 134809 4625038 ~ 4625307 (-) True G59241
XR_005639407.1 lncRNA downstream 202503 4548725 ~ 4557613 (-) True LOC120560046
TU79528 lncRNA downstream 299045 4454690 ~ 4461071 (-) True G59207
TU79690 lncRNA upstream 82296 4949271 ~ 4949523 (-) True G59312
TU79692 lncRNA upstream 137991 5004966 ~ 5005663 (-) False G59314
TU79693 lncRNA upstream 137991 5004966 ~ 5005663 (-) False G59314
TU79694 lncRNA upstream 137991 5004966 ~ 5005663 (-) True G59314
TU79696 lncRNA upstream 137991 5004966 ~ 5005343 (-) False G59314
XM_039803161.1 mRNA downstream 64906 4644604 ~ 4695210 (-) True si:ch211-158d24.2
XM_039802039.1 mRNA downstream 117378 4639104 ~ 4642738 (-) True LOC120559971
XM_039802393.1 mRNA downstream 216257 4531968 ~ 4543859 (-) False dph7
XM_039804217.1 mRNA upstream 554646 5421621 ~ 5445464 (-) False si:dkey-112e17.1
XM_039804216.1 mRNA upstream 554646 5421621 ~ 5445410 (-) False si:dkey-112e17.1
XM_039804215.1 mRNA upstream 554646 5421621 ~ 5445410 (-) True si:dkey-112e17.1
XM_039802580.1 mRNA upstream 621781 5488756 ~ 5498896 (-) False pgam5
XM_039802579.1 mRNA upstream 621781 5488756 ~ 5498896 (-) False pgam5
TU79521 other downstream 323800 4432844 ~ 4436316 (-) False LOC120560375
TU79519 other downstream 325048 4432844 ~ 4435068 (-) False LOC120560375
TU79518 other downstream 325048 4433125 ~ 4435068 (-) False LOC120560375
TU79517 other downstream 330075 4424190 ~ 4430041 (-) False sub1b
TU79274 other downstream 1070778 3688629 ~ 3689338 (-) True G58994
XR_005639605.1 other upstream 599248 5466223 ~ 5466437 (-) True LOC120561493
XR_005639606.1 other upstream 724607 5591582 ~ 5591708 (-) False LOC120561494
TU79960 other upstream 1559231 6426206 ~ 6426786 (-) False G59521
TU79962 other upstream 1559231 6426206 ~ 6426811 (-) True G59521
TU79959 other upstream 1559275 6426250 ~ 6426786 (-) False G59521

Expression Profile