RNA id: XM_039804085.1


Basic Information

Item Value
RNA id XM_039804085.1
length 3373
RNA type mRNA
GC content 0.45
exon number 16
gene id plat
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 26585780 ~ 26597313 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGAGGGGTAACAAGCTCATTTCGAGCGACAAATCCCAAGGACGCTCACGCTGCTGCAGAGTCACTGAGAAGTTACAGATTCAGAAGACTTTTAATTTGTGATCTCCCTCAGTAGCAGGCGTAAGGATAGAGGAAGGAAGCTGAACAGAGAACCAGTATAGTCGGGATAAGAAAATTGAAGACCACTTGAGAAGCCATGACCAGAACACTTGGATTGTTAATGCTcctgtctgctctctgctgtagCCTAGCGGACAACGTGGAGCTGCTCCGCACTAAGAGAGGGACTCGTTTTTATAGAGGTGAGCCTGACAGGCAGCCAGCCAGACGGACACTTTTGATTATTCATATCGAGAAGTCTTCACCTTCCTTTGACACCTCCTtACATTGTGTGGATAGTGAGACATCAGCAGTGCATAGTTTTGGGGACACTTGGCTGCGATGGAGGGGACAGCGTGTGGAGTATTGCCGTTGTGCATTAGGAGGACGAGATCTTTGTCATATTGTCCCCGTCATCAACTGCTACGTGTCTCAGTGCTACAACGGAGGAACCTGTAAGGAGGCCGTGTACACTTCAGACTACATTTGCCAGTGTCCTCGAGGCTTCAGTGGGACTCAGTGTGAGATCAACACCAATGAGAAGTGCATTGTGGGGCAGGGTGAAGGGTACCGCGGCACATGGAGCATCAGCCATTCAGGAGCAGAGTGCATCAACTGGAACTCTACGTCTCTGAGAGGAAGGAGGTTCACAGCTACAAAAGGGGACGCCAGCAGTCTTGGACTGGGCAATCACAACTTCTGCAGGAACCCCGACCAGGACAGCACTCCTTGGTGTTACATCTATAAGGGCACTCAGATCGTCTGGGAGTTCTGTTCTATGCCCAAATGTCCAGAAGATAAGTACCAAAAGTGTGTGCTTGGCTCCGGCCAGTCATACAGAGGCACAGCGTCTGTCACTAAGAGTGGCTCTCGTTGTCTCCCGTGGGACTCTCCTGTTATCAAGCGTAAGGTCAACAATGCTTGGAGATCTAATGCATTAGAGCAGGGACTGGGCAGCCACAGCTTCTGCAGGAATCCAGACGGTGATGAAGGTCCATGGTGTCACACCTACAAGAACATGCAGCTGACCTGGGAGCTGTGTGACATACCTAAATGCTCGAGACCTCCATCTATCATCAGCTCTCTCGGCCCACGTGCCCCCACCGCTAACATCAATAATAGAGCAACATGTGGGCAGCGCTTAGACAACACCCTGAATCGACCGGCGTTCCGCATGTTTGGGGGCAGAGAGAGTGACATCACGGAGCAGCCGTGGCAGGCAGCCATTAATGTTTACCAGGCCCGTCACAGAAAACACTTTCACCGATGTGGTGGAGTCCTCATTGACTCGTGTTGGGTCCTGTCTGCTGCACACTGCTTCGAGGACAATGATAAAGCAGAAAAATTGGAAGTGATTTTGGGAAGAACGTTTCGGAAGCAGAATTCCACCAGCGAGCAGATTTTCAAGGTTGAGAAGTACTGGATCCACGAGAAATTTGACAACGAAACATTTGACAATGACATCGCTCTCTTAAAGCTGAAGACGGACTTTGGCATCTGTGCTATAAACTCTCCGGAGGTTCTTCCTGCGTGTCTGCCTGAACGTGGGCTGGTTCTGCCCGACTGGACTGAGTGTGAGATCTCAGGCTATGGAAAAGATTCAGAATTTTCTGCAGAGTACTCTGAGCGTGTTAAGAGAGGATACGTTCGCCTGTGGCCCAAAGAGCGCTGCGTCCCAAATGTGCTGTCTGGGCGCACAGTTACCCCCAACATGCTGTGTGCAGGTGACACCCGAGGCCTGGACGATGCCTGCAAGGGAGACTCTGGTGGCCCGCTCGTCTGTCAGAACAATAACAAGATGACTCTGATGGGTGTGATCAGCTGGGGTGATGGGTGCGGGCAGAAGGATAAGCCTGGGGTCTACACCCGTGTCACCCAATACATCAACTGGATCAACGACAAAATTAAGGCAAACCCGGTCTAAAGTAAGAGAGACTGCAAAGATGGATGACCATACCATAAACACAGTGGGTAAAACAGCAAATGCAGATATGTTTATCATTGATAAGATAGACAGATGGATCCACAGGACTCTTATTCTGTTGTTAATCTGTTGACGTAAATCCAAAATGATGGAGGTTTTAAACCAGCAGGACCACTCCTATTGAGAAGGACCTCAATTGTGAGTTTTTATGCTCAATGTAGCTCAGAGCTCTAAAGTTTGACTTACTGTGTTGAATGTGACAGTATATATGGACAGAAACACAGGACAAACCCTTTTTCCTCCTTCTAGGCCATTTGGATCTGGATAATCCTTTTTGTCTCTTCACGCATACAACATTTTCTAAATATGGCATCCACCAAACTGGAGGTTCAGGTAGTGAACCTACAATAACAGGAAGAATTGGAAATATCAGTATTTTCCTCTGCTCTTTCTGGTTGGCTTTATGCTGGTTTatacaaaaaagtcacagtggTACACCTAAGGTCAGTAGTGCTTTTAATTCAAAAGAACACTCAACACAAGCATTTACTTTGCACAGCACAGTATGTCACATAGGAATGTAGGCCTTTTTTAAAGTTATGTGCAAAGATTATGTTACACACTTGTCCTTTAGATGTGAGGTTATGTTGGCTTAATTTGTTGTATTGCAAAATGTTCTGCATTTGCCTACTTTGGGGCTTTATGGGTTCCAGACCCCAAACACAAAATGTATCTGCTGGTTCAGATTCTGCTTGTTGTCTGCAGTTTGAACTCCTTTAGCTCCCTGCTAAAGTATCTATGTTGTATTGATGTCTCTATGTTTATAGCTTTTGTTTTTAGGTTGTtgtgtggtgattgttggagcttgtattgcaagacaaatttccgtgtatacggacaataaagtgctatctatctatctatctatctatctatctgctaCCTTGTGGATGGGATTAGATTTGGACAAGTGGAAGTTCTGAGATATTCACTCCATTCAACAAACCCTGTTCTGTGTTCTCCCGCTCTGGAAGTCTGTTTTTAAATCAGATATTCCGACATTTCTCCACCAGACACCTGGGTTGAGCCCAGTATGCACTGTATATAGCATGTATATTGTATGAATATTGATTTTACTTTAAACTGCTTAATTGCTGCAAAGCCTTAACAAAGTCCCTTTGTTTTGTGACTGGGGTTTAGAGTTTTTTTTACTAAGTTAATAtttatgtgtattttatattgtattggaGAAACTACTTTTGTACTGTAGTTTGATAATTTATTGTCTCTGTCAATATAACCACATCTGGCAACATACTCCTTTgtcaataaataatatttgaaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86879 lncRNA upstream 4974 26572244 ~ 26580813 (+) True G64893
TU86818 lncRNA upstream 45151 26540415 ~ 26540636 (+) True G64841
TU86816 lncRNA upstream 45564 26538658 ~ 26540223 (+) True G64840
TU86815 lncRNA upstream 47246 26538268 ~ 26538541 (+) True G64839
TU86813 lncRNA upstream 48092 26535108 ~ 26537695 (+) True G64838
TU86926 lncRNA downstream 65454 26662767 ~ 26663526 (+) True G64930
TU86940 lncRNA downstream 85205 26682518 ~ 26684255 (+) True G64944
TU86951 lncRNA downstream 164078 26761391 ~ 26829185 (+) True G64949
TU86978 lncRNA downstream 296388 26893701 ~ 26896143 (+) True G64967
XR_005639508.1 lncRNA downstream 300589 26897902 ~ 26899558 (+) True LOC120560738
XM_039804321.1 mRNA upstream 32056 26543026 ~ 26553731 (+) True vdac3
XM_039804322.1 mRNA upstream 32056 26543026 ~ 26553731 (+) False vdac3
XM_039804323.1 mRNA upstream 32056 26543026 ~ 26553731 (+) False vdac3
XM_039804324.1 mRNA upstream 32056 26543026 ~ 26553731 (+) False vdac3
XM_039804313.1 mRNA upstream 74542 26506645 ~ 26511245 (+) True rpl6
XM_039802156.1 mRNA downstream 682 26597995 ~ 26607634 (+) True si:dkeyp-117b11.1
XM_039803338.1 mRNA downstream 16924 26614237 ~ 26644167 (+) True cltcl1
XM_039803339.1 mRNA downstream 16924 26614237 ~ 26644167 (+) False cltcl1
XM_039803340.1 mRNA downstream 16925 26614238 ~ 26644167 (+) False cltcl1
XM_039803341.1 mRNA downstream 16925 26614238 ~ 26644167 (+) False cltcl1
TU86790 other upstream 89401 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other upstream 89459 26494335 ~ 26496328 (+) False c6h22orf39
TU86793 other upstream 89526 26494335 ~ 26496261 (+) False c6h22orf39
TU86770 other upstream 171190 26412869 ~ 26414597 (+) True G64814
TU86550 other upstream 670258 25914382 ~ 25915529 (+) False LOC120560031
XR_005639500.1 other downstream 16924 26614237 ~ 26642481 (+) False cltcl1
TU86927 other downstream 47707 26645020 ~ 26657969 (+) False si:dkey-178e17.1
TU87117 other downstream 607921 27205234 ~ 27301770 (+) True G65084
TU87830 other downstream 2752811 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 3589535 30186848 ~ 30212108 (+) False fbxo21

Expression Profile