RNA id: XM_039804097.1


Basic Information

Item Value
RNA id XM_039804097.1
length 2455
RNA type mRNA
GC content 0.43
exon number 10
gene id tango2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 5643204 ~ 5667209 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGACGACTGGATACACAAATCGAGGTCACTCAAAGAACACTTCCTTTTAGTTGACACCAGCGAGTGTAAAGGGACAGTGAGTACAACTAGCCGACACTTCACAGCAGTGAACTGTATAGAAGACCGCGGAAGGGCACAGCATGCACTCTGGATGGTCCATCGGTTTGTCCTACAGCCAAGTACTCTGTATATGACTAAACTTTGAAGACAGATGTGCATTTAGTGAAACCTTATCATCAATCCCCCCAGTACATCCATGTGTATAATTTTCTTCAAGTTTGACCCCCGGCCTGCGTCCAAAAATGCCTACAGGCTAATATTGGCTGCAAACAGAGATGAGTTCTACAACAGGCCGTCCAAAGCTGCAGACTTCTGGGGGACCAACAGTGAGATCCTCAGCGGCCTGGACCTGGAATGTAGTAAGGAGGGAGGATCATGGCTGGGGATCAGCAAGCGGGGCAAGCTGGCTGCAATCACCAACTACATGGAAGGACGTCTCAACCCCGATGCACAAGGAAGAGGATTTCTAGTGTCTAACTACCTGATGGACAAGGATCTGGACTGCTACTCTTACCTGAAGAAGGTGTCGACAGAAAGCCACCTGTACAACGGCTTCAACCTCATCACCGCGGAGTTCAAGGCCAAACAAGACACTGTGTGTTACTATGGAAACCGAGGCAGCCCTGAACCCATCCATCTAAAAGCAGGAATCTACGGCTTGAGTAATTCACTGCTGGAAACTCCATGGAGGAAACTTTTGCAAGGCAAGCGTCACTTCACCAGCGTTGTCAGCGACCAGTCCCTGTCCTGCGACGGACTGGTGCAAGAGCTGCTCAGCGTCCTCAACAACGAGGAACTGAACACACCTGATCCAGCTCAGGAGAGACAGGGTGATGGTTTAAGCAAGCCGGCAATCCAGGCTCAGTCTGCAGTGTGTGTTCGCACCCCTCATTATGGCACAAGGACCAATACGATTATCCTGATAGACGCAGAAGGCAACGTGTCCTTCACAGAGCGCACCATGCTCAACTGTGACACAAGCAAATGGAGCACCAGTTCTTTCCAGTTCAAACTGCAGGCGTAAAGACATGATGGAGGAAACCCACTCTGTGCCTTTCTGCATTACCTTTCCTtccatcacccccccccccctcctcctcaagcTGCAGTTGATCATAGCAGCTATGTGAACATGTCGGCACAGTGATATGTAtttcttattctttatttaagctaaaatgcttttttttttcttttcttttttttttttttaaattgtgtgcTAATTTAAAAGATTGCCAAAGAAGATTTTATAATTTTGTAGAGGAAAATTATTTTACCCACATTTCACAAAACAGCAGGGTTGGGTTGCTTCAAAAAGTCTAGTCCAGTACAGGTCGCTGGTAacctgctttaaaatgcaaccATTACCATCGAGATTAAGATTATTTTAATGCAATCTAATTTATTCTTTTTGGTGTCATATTTTTACCTATACATGTCGTGAAGTGAACATACACTTTATGCACAATTTCTAAACTGcaattttaaatagtttttttgtttcacaCAATGGGAAAACGTTGAGCCACCAGTATTTTTCTAGAGAACGTGTCATCTGATTTAGGTTTACAGTTACTGTCATAGATTAGCGCTACCAActactttttacatttctgaTTACTGTAACTTCATTACAGGTAATTCATGAGTTACATCCCAACCCTGCACAACAGTAGCCTGAATGTTGGTTACAACAGATGTTGAATGCATACCGTTTTCAGGCTCTGGATCTCTGACCACTTCCACAGCTgcttgacaataaaaaaaaaaaaaacactcacattTGGCTTACCATGTAATGATTGTTGACAGAAACACACTGGGAGGAATCCATTTTTTGTTTAAGTGATCACATCTGTTCATTCACCTGCCAGGAGATTTCTGCATTATATCAAAAAGAGAGCTGGTTCTTCCTTTTGCCGTATGTATTCTGCTTATTGTGTGTGTTCGCCATTTACCCACACGTTACTCTTACAGGTGATGCTAATTCAGCAGGAAAAACAAAGCTGTTGAGTGGTTTAGAAACTCAAACTGGAGAAGGCTTGTGCAAATATTAAATATCTATTATTTATTCCTCTATACTTAATGGACTAAAAGAGTTTTTCAAGAGGCGTATTTCCACTATCTTGTGGGGAGAGGGGTATTTGAATTACCAGTGGCCCCATCGGGTTAATGTCAGCTCCTCAGGGGCCCATGAAAGCACAAGAACCCACACTATATATGACTTGAATAATGGAGCTTTCATATAGCCATGTGGCTGTCCCAGGCAGTCTACAGCAGACTTTATTCTCTACAAAAAAGCAAATTTCAGATTTTTAACATGGCATTTTGACACCTTGTTAAAGTAGGAAATGTACAGgggcaaataataaaattagTTAATTACATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79875 lncRNA downstream 362 5642616 ~ 5642842 (-) True G59441
TU79874 lncRNA downstream 653 5642315 ~ 5642551 (-) True G59440
XR_005639428.1 lncRNA downstream 10018 5629116 ~ 5633186 (-) True LOC120560122
TU79871 lncRNA downstream 11407 5630750 ~ 5631797 (-) True G59437
TU79818 lncRNA downstream 13138 5629123 ~ 5630066 (-) False LOC120560122
TU79892 lncRNA upstream 291699 5958908 ~ 5961150 (-) True G59457
TU79939 lncRNA upstream 510542 6177751 ~ 6177970 (-) True G59501
TU79943 lncRNA upstream 553376 6220585 ~ 6220850 (-) True G59505
TU79945 lncRNA upstream 581424 6248633 ~ 6248878 (-) True G59507
TU79946 lncRNA upstream 584996 6252205 ~ 6252412 (-) True G59508
XM_039802582.1 mRNA downstream 16819 5607031 ~ 5626385 (-) True dgcr8
XM_039802585.1 mRNA downstream 48300 5590574 ~ 5594904 (-) True ranbp1
XM_039802586.1 mRNA downstream 48309 5590574 ~ 5594895 (-) False ranbp1
XM_039802580.1 mRNA downstream 144308 5488756 ~ 5498896 (-) False pgam5
XM_039802025.1 mRNA upstream 381754 6048963 ~ 6061862 (-) True tbx1
XM_039802026.1 mRNA upstream 381754 6048963 ~ 6061861 (-) False tbx1
XM_039803522.1 mRNA upstream 1227993 6895202 ~ 6941736 (-) True hk2
XM_039802066.1 mRNA upstream 1494092 7161301 ~ 7169700 (-) True ch25hl3
XM_039803504.1 mRNA upstream 1515604 7182813 ~ 7212011 (-) True erlin2
XR_005639606.1 other downstream 51496 5591582 ~ 5591708 (-) False LOC120561494
XR_005639605.1 other downstream 176767 5466223 ~ 5466437 (-) True LOC120561493
TU79521 other downstream 1206888 4432844 ~ 4436316 (-) False LOC120560375
TU79519 other downstream 1208136 4432844 ~ 4435068 (-) False LOC120560375
TU79960 other upstream 758997 6426206 ~ 6426786 (-) False G59521
TU79962 other upstream 758997 6426206 ~ 6426811 (-) True G59521
TU79959 other upstream 759041 6426250 ~ 6426786 (-) False G59521
TU79961 other upstream 759041 6426250 ~ 6426811 (-) False G59521
TU80011 other upstream 855550 6522759 ~ 6523674 (-) True G59563

Expression Profile