RNA id: XR_005639564.1


Basic Information

Item Value
RNA id XR_005639564.1
length 3669
RNA type transcript
GC content 0.45
exon number 3
gene id LOC120561144
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 10748116 ~ 10752440 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tagtttttcagcgtcgttttgagacaggatattcctaattttggcaatgttacgaagatgaaaaaaggctgttaaaagtaaaaaaaattaaaagtaatgCTAAATGGTTCTCTGTTGTTGATTTGTCTAATGCTTTTTTCAGTGTCCCGGTGGACAAAGACAGTCAGTTCTGGTTCGCTTTCCTGTTTGATGGAAAACCATACACTTTCACACGCCTTTGTCAGGGATACACTGAATCTCCGACCATCTACAATGACGCACTGCGCGACAGCCTAGAGAGCTTCACACCAAACCTAGGTTCAAGTCTGCTGCAGTACGTAGACGACATTTTGATTGGAAGCTCAACACAAGCTGTGTGAGCATTACACGATTGCGCTATTGTGTCATCTTGCAACTGAGGGACACAAAGCCAGTCTTAAGAAATTGCAGTTTGTAAAACAAGAGGTCCACTTCCTGGGACATGACATTTCTGGGTCAGGGAAAACCTTGTCTCCTTCGCGAATTGAGGCAATTGTTTCCCTACCAAAACcggtaacaaaaaaacaaatgatgtcATTTTTAGGAATGTGTTCCTACTGTCGTGTTTTCATCCCAAATTACGCGGAACTTGTTCAACCTTTAGGGGACGTGATACACGGTAAGGGACTGACTGCACACAATTTGGTAACCTGGACTGTTGAGGCTGAGCAGGCCTTTGTAAATCTTAAAAAGGCCTTTCAAAGTCCCTCAACCTTAGGTTTGTCATTTCACTCAGACAGTGGATGAACGCTTAGGATGCATGACATCTGTTCTCCTGCAGCCGCATGGAGACAGACTGAGGCCTGTGGCCTATTTCTCTGCAAAACTCGATCCAGTTGCAGCAGGCCTTCCGATTTGTCTCAGGGCTGTAGCAGCTGCTGAAAGGGCTTTGGCGGCATCACGTGACATAGTAGGATATGCTCCACTCACACTGTTAGTCCCACATGCTGTCTCTTTGATCCTACTTGAACAAAAGGCTTCACATTTGTCTGCAGCACGATACCTACGTTATCATATAGTACTTCTTGACATGCCTAACGTAACAGTTAAACGTTGTACTGTACTTAACCCTGCTTCTCTTATGCCTACACCAGAGGACGGAGAACCACATGACTGTTTGGCAGAGCTGGCGCAAACATGCACACCTCGCCCAGATCTTTCGGATACTCCTTTGGAGAATCCAGACCTCATTTTGTATGTAGATGGGTCAGCCTCTCGCTGCCCACAAACAGGACAGGGACAGGTAGGATTTGCTGTAGTTTCTGACACTGAAACTATGATTGCTAAATCGCTCCCAAACCATTTGTCTGCACAGGCTGCTGAGCTCATTGCCCTCACGGAAGCATGTAAGTTGGCTGATGGCTCATCTGTTACCATCTTCACGGACTCAAGGTATGCTTTTGGAGTGGTGCACGACTTTGGTGCACTGTGGAAACACCGACAATTTCTGAAATCTGATGGTAAGCCCATTTTACATCATTTGATCAATGATCTTTTGACTGCTATTCTACTACCAACATGGGTGGCTGTATGTAAATGCGCTGCACACACAGGAGCGCAAGATGCTGTCTCTAGGGGTAACAGTCATGCTGATATAGCTGCTAAAGCAGCTGCACGCCTGCCCCTCACATTCGACAACTTAGCTCACACTGCAGAGGATCACTTCTCACTCCCAGAGTCTGTCATTGCTATGCAGACACATGCTACACCACAAGAAAGACAACCGTGGAAAACAGTAGGGTGCACCTTTAACACTGGCATCTGGCTAGGGCCAGATTCTAAACCATGTCTCCCAAAAcactttttcccacattttgcTAAGTTGACACATGGGTTGGACCATATCTCCAAAGGGGGAATGGTGGTAGCTATCACGCAGACATGGTTTACAAAGGGGTTCACTACATTAGCAGAATAATTTTGTAAAGCTTGCATAATATGCGCACAACACAACATTGGCAGAGGAGTGAATGTAACACGACAGGCAACCCACCAACACGACCATTTGAACATTTGATGATGGATTTTGTTGAGCTAACACCgtcagaggggaaaaaacattgcCTCGTTATGGTTGATGTGTTCTTTAAATAGGTGGAAGTGTTCCCGGCCAAAAGACAGACAGCTTCAGTGGTGGCAAAAGCTCTTCTGACAGAAATCATTCCCAGATGGGGAATACCGAGCCTTGTGTCTAGCGACAATGGAGCTCATTTTGTAAACTCAGCGATAACAGAGCTTGTTTATCGGTATAAACATCAAGACGCATTGCAGTTATCATCCCCAATCCGCAGGATCGGTGGAACGCGTGAAAAGCAAAACTAGCGAAATGCTGTGCAGACACAGGCCTCCCTTGGACAAAGGCGCTACCTTTGGTCCTAATGTATATGCGAATGCGTACACGATCTCGTTCCAATCTCAGTCCATATGAGATTCTGTTTGCCAGGCCTCCTTATGTAAGGACAGAAATGCCAAAGGCGGCAATTCCCTCAACAGCTCTATGTGAACATGACATGTTGAAATACTGCACCCAACTTTCTTCTGCTCTTTCTGACATAAGAAAACAGGTTTCAACAGGTCTGCCTAAACCAGCTGAGGGACCACTGCATAAGCTCCGGCCTGGGGACTTTGTGGTGATCAAAAGCTTCAGGAGGAAGAACTGGCAGTCCAGACGGTGGGAAGGACCCTTCCAGATCCTCCTGGTCACTCACACAGCGGTCAAGGTCGCGGAACGATCCACGTGGGTGCACGTACCCTCCGAGGAGATTCGGGGGGTCCAAATTTacacactaggAACACTAGTGAGGGAGCATGGGAGGGGAAAGCGAGTGACGCGTTCCACAGTTTCTGCGTCTAGAAGTAGATGGCGTTCAGAGTACAACAGTGACTCCTTTCATCCGCTCCATCTACAACTTCCTGTAAGGGAGATCACATTCTCCGAAGCAGTGCTGATCCAGTTCAACTTTTCCCGAGGAGGCTGCGGTgtcatccattgttttgaaagGTGTCCCTTGACTGTCAGCTCTCCATCGCAGCCCTGCATGGCAGTCAAGAAAAGAATCTCCtgaatatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctaaataaataaaaaaaattgcccAGCCCAAACTTACTTTTTCTGACACTTTTAACATTAACTTGTACGTAATTCATCTCCATACACTGGAGTATCTCATGAGTACAGATGCCCATCAATACGCTGTTGCAGGATAGGTGAATGACacttgaagaaaaacaaatgtacagtatgtgataaCAGGACATGCAAGTCATCAATTATCAACAGTGTTATTTTTGTGGTGGTTAAGTATAGATCGATCATGCAGTAAGGGCTGACGGCTGGTTAACATTACGGACAAAAACTATTTGTTCCGCGTATTCTCTTGTGTGTATCCCATATATCCGTCTACTCTAGCAGTTGTGGTTGATATGACGTAGGTCCCCTAGCTTTGACCAGACACAAAAATGGTGACAGCAAAGCAATGTGATGTCACGTGGTCCTTATAAATATATACCAGAAATTATGCACAAAGGACTACTTGCACCCTAGTGCTGCTGATTTTTTGatgttatttaataaatgtcatgttttatatctgtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81260 lncRNA upstream 5230 10742652 ~ 10742886 (+) True G60575
TU81259 lncRNA upstream 11936 10735721 ~ 10736180 (+) True G60574
TU81251 lncRNA upstream 43423 10686683 ~ 10704693 (+) True G60566
XR_005639494.1 lncRNA upstream 44682 10702631 ~ 10703434 (+) True LOC120560597
XR_005639493.1 lncRNA upstream 45599 10701819 ~ 10702517 (+) True LOC120560596
TU81262 lncRNA downstream 18106 10770546 ~ 10770824 (+) True G60577
TU81296 lncRNA downstream 60339 10812779 ~ 10814069 (+) False G60607
TU81298 lncRNA downstream 60339 10812779 ~ 10852906 (+) True G60607
TU81299 lncRNA downstream 62123 10814563 ~ 10840317 (+) True G60608
TU81312 lncRNA downstream 149621 10902061 ~ 10905629 (+) True G60620
XM_039804112.1 mRNA upstream 1163 10726438 ~ 10746953 (+) True LOC120561142
XM_039804111.1 mRNA upstream 1163 10726439 ~ 10746953 (+) False LOC120561142
XM_039803877.1 mRNA upstream 767062 9927049 ~ 9981054 (+) False LOC120560959
XM_039803878.1 mRNA upstream 767062 9927049 ~ 9981054 (+) False LOC120560959
XM_039803880.1 mRNA upstream 767062 9927049 ~ 9981054 (+) False LOC120560959
XM_039802043.1 mRNA downstream 420579 11173019 ~ 11188211 (+) False marveld2b
XM_039802044.1 mRNA downstream 420634 11173074 ~ 11188211 (+) False marveld2b
XM_039802042.1 mRNA downstream 421347 11173787 ~ 11188211 (+) True marveld2b
XM_039804537.1 mRNA downstream 441047 11193487 ~ 11206112 (+) True oclnb
XM_039804538.1 mRNA downstream 441102 11193542 ~ 11206112 (+) False oclnb
XR_005639562.1 other upstream 1168 10726446 ~ 10746948 (+) False LOC120561142
XR_005639542.1 other upstream 767062 9927049 ~ 9981054 (+) True LOC120560959
XR_005639543.1 other upstream 767062 9927049 ~ 9981054 (+) False LOC120560959
TU81096 other upstream 767127 9927107 ~ 9980989 (+) False LOC120560959
TU81099 other upstream 794877 9926950 ~ 9953239 (+) False LOC120560959
TU81647 other downstream 1173743 11926183 ~ 11926601 (+) True G60897
TU81938 other downstream 2168707 12921147 ~ 12923836 (+) False G61139
TU81939 other downstream 2168707 12921147 ~ 12923836 (+) True G61139
TU82171 other downstream 3355043 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 3389002 14141442 ~ 14142050 (+) True G61338

Expression Profile