RNA id: XM_039804121.1


Basic Information

Item Value
RNA id XM_039804121.1
length 2627
RNA type mRNA
GC content 0.53
exon number 14
gene id mamdc2a
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3630736 ~ 3675225 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCATAAGGTCGACTCGTTGCTGACCGACACATCCTACCGCCCCCGGGagatccattcatccatccacccaCACACCGGATAATAAAGAAAAGCCTGCATCTCTGCTGCTGACATTACAACATGTGAAAGACTCTTCGCTGTTGGCCTGTAGTTCTTTGGGGGATTTACCGGGAGCAGATCAGAAACTACAGTCTCTCTGCACCGCGGACACGATGAGCAGCGGCCGCCTCTCTCTGCACGTACTGCTCCTGTGCGGACTCCTTCgggcgcagcagcagctgctgcccGGGTCCTGCAACTTCGAGCTGGGCACCTGTGGCTACACATCCGACCCGGAGTACGGCAGCTGGAGCATGAATGAAGAAGGGCATTTGATAACAGTGGACTCAGCCTTCTTGAAGGAGCAGGAACATGCAGTTCTGGTCAGTCCAGTCCTGGAGCAGCAGGACTGGAGCTGTGTGAGGCTGGTGTACCAGATCACTGGACAGGGTTCCCTGCAGCTCCACCTCAGACCCGACGGAGACAACTTTGACTACCGACTGTGGAGCGCCAACAAAGCCTCTGACAGCTGGCTCATTGCTAGTGTGGACCTGCCAAACACCACCATCCCCTACCAGGTTTTGTTGGAAGGTCGACCTGAACGGGACCCAGGGAACAACGTGGCCATCTTTGAAATTCACATTGTTCCTGGTTTCTGTATAGAGTGTAACTTTGAGGAGCATCACCTGTGTGGCTACAGTAACAGCTGGAACCCAAACGTCAACTGGTACGTTGGGGGGAGTGTGGCCAGAGAGTCCAACCTGCTGCTAAACCACACCACCAACAACCAGagagGCCACTACATGTATGTGGACTCGGTGTACGCCAAGCACTTCCAGGAAGTAGCCAAGCTGACCTCGCCCATGACCACGGCGCCCATGGCCGGCTGCCTGTCCTTCTACTACCACAGAGACCAGGAGAGGGGAAACATCTTCTCAGTTTTCACCAGAGACCAGCTGGGCCACTATGAGGAGATCTGGAGGCCAGAGGTGTACGCTACTCCCGGCTGGACTCAGGTCAGCGTGGACATCAAGGCCCCGCACCCCCTGGAGgTGGTGTTTGAGGTGGCTTTTAACAGTGCCAGAGGTGGATACGTGGCCATAGATGACATCTCCTTTTCTCCTGAATTCTGCCACACTGACACAGAGCcgacctttgacccctctaTAGCCAACTGTGACTTTGAGAATGGGCTGTGCCTGTACTACCAGGAGAGGACGGAGAGTAAGGTGTGGAGCAGAGTCACAGTCAAGCCCAACGCCTACAGGATAGGAGACCATACCACCGGAGCAGGCTGTTTCCTCCTGGCCAACACGCGTTTCACTGCTAGGCCCGGCTATGTGGGTCGGCTTCACGGTCCCTTCTTACCAGGGAACCACAAATACTGCGTGAGGTTCTACTACATGCTTCATGGATTTCGGAAAGTAGACAATGCTCTGGTTCTTTACATTTATGACGAGAACAATGTGGCCCAGGAGAAGGTGTGGAGCCTGGCTGACACTTCCGCGGCTGTGTGGACTGAGGTGGAGATCACCTACATGAAGCCCATGCTTTCCAAGCTAGTGTTTGTCAGCATATGTAAGAACTTCTGGGAATGTGGCCTGGCAGCCATCGATGACATCACTGTCAGCCTGGGGGACTGTCAAATCACAGCAGGCTCCCTCCCAGGCCGGTGTAACTTTGAGAGTGGAGTCTGTGGCTACATCCAGGATAAGAAAGAAGACAAAGCCGACTGGCTGCGAGTCCGAGGACACACCCCCACCTCCTATACAGGGCCCAGAGGAGACCACACTACTGGGGTGGGTTACTTCATGTACATCGAGGCGTCTCTCATGCGTCCGGGTCACAAGGCTCGGCTGCTGACCTCTGATCTGCGGGGCGCCTCGTCCCCCCAGTGTTTGATCTTCTACTATCACATGTATGGATCTGGCACCGGCATACTGACCGTGCTCCTGCGccgcagcagcagagagcaggacGCGTTGCTGTGGAGACGCCGCGGGGAGCAGAGTGTCAGCTGGATGAGGGCGATGGTGGACTACCACTGTGATGTCCGACACCAgATTATATTCGAAGCCATCCGAGGCCCATCACTACGAAGTGATATCGCAATTGATGACATCCAATTTAAAAGGGGACCATGTGAAGATCCTGGTGACATCACTCCATACTCAGGCTTCTCAGAGTATTTCAATGAGATTGAGAATTGAGACTGGAGGGAAAGTCTTTCTGCATAAATGCTTGGTAGTTTTTCCGAGTTTGGCTGGGTGGCTTTCAGAAGTGTGAATGTGAACCATCCACCAAGACAATTTACAGAGTTGTAGAGCAATGTATATGATGCAGCCAATAATTGGAATTGTATTAAACACTGGGGAATGGTTGGGATTTCTCCTTGGGACAACGTTATCCAGCTACATCTCACAACAGTCACACCAAAGGTCCATATAGGCTGGCTCACTAtccatctctctcacacataatGCAAAACTCATACACTGGCAAGTAAAGCCTAAATGCAGCCTTCTGTCCACTCAAGCATAAGAGTATTGCAGGTATTAAAGTCTGTTTCTACCTTTTTGAAACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79211 lncRNA upstream 24427 3606062 ~ 3606309 (+) True G58948
TU79205 lncRNA upstream 74557 3547808 ~ 3556179 (+) True G58944
TU79200 lncRNA upstream 107115 3522846 ~ 3523621 (+) True G58941
TU79146 lncRNA upstream 107980 3521131 ~ 3522756 (+) False LOC120560521
TU79156 lncRNA upstream 125987 3504451 ~ 3504749 (+) True G58900
TU79263 lncRNA downstream 123813 3799038 ~ 3803097 (+) True G58986
XR_005639569.1 lncRNA downstream 162082 3837307 ~ 3837679 (+) True LOC120561177
TU79324 lncRNA downstream 215820 3891045 ~ 3891853 (+) True G59033
TU79323 lncRNA downstream 220445 3895670 ~ 3896241 (+) True G59032
TU79333 lncRNA downstream 285835 3961060 ~ 3961319 (+) True G59042
XM_039803133.1 mRNA upstream 83403 3525307 ~ 3547333 (+) True fam189a2
XM_039803134.1 mRNA upstream 83403 3525307 ~ 3547333 (+) False fam189a2
XM_039803126.1 mRNA upstream 109172 3464062 ~ 3521564 (+) False LOC120560521
XM_039803625.1 mRNA downstream 12820 3688045 ~ 3775673 (+) False arid3c
XM_039803627.1 mRNA downstream 12820 3688045 ~ 3773518 (+) True arid3c
XM_039804162.1 mRNA downstream 143097 3818322 ~ 3827427 (+) True LOC120561175
XM_039804168.1 mRNA downstream 173254 3848479 ~ 3868576 (+) False rad17
XM_039804172.1 mRNA downstream 173254 3848479 ~ 3868576 (+) False rad17
TU78941 other upstream 750992 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 3418366 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 442054 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 748916 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 756946 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 757443 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 854885 4530110 ~ 4531165 (+) False mrpl41

Expression Profile