RNA id: XM_039804133.1


Basic Information

Item Value
RNA id XM_039804133.1
length 7822
RNA type mRNA
GC content 0.48
exon number 43
gene id loxhd1b
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 24974336 ~ 25000464 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGAGCATCAAAAACACAGGTATTTTTCTGGTGGAGATCCCCAGAGCAAAAAAAGTGTATGAGGTGGTGACCATCACTGGCGATGAGAATGGAGCAGGAACCGACGCCAATGTGTTTGTCATTCTGTTCGGGGAATATGGCATCACTCCCAAAATCCACCTGGCTAGCAACACAGAAAAGAGGAGCCGCACAGCATTCGAAAAAGGCAAAACTGATGTGTTCAGAATTAGAACTCACAATGTTGGACCTTTGCAAAAGATACGGATTGAGCATGACAACACCGGCCTGAATGCCAGCTGGTTCTTGGAAAGAGTGGTGGTGACAGATGTGATCAGGCCTCACCTGAGGTTCTACTTTGCTTGTAACAACTGGTTGAGTAAGGTGGAGGGAGACTGCCTTTGTGTCAGAGACCTGCTGGGTACTATGGACCCCATGGACTTtccaaaatATAATAAGTATATAGTGAGTGTTTTCACTGCGGATGTAAAAGGCAGTGGAACAGACGCAGATGTCTTCATCAATATCTTTGGGGAGTTTGGAGACACAGGTGAAAGGCGACTTGCCAGTGACAAAAATAACTTTGAAAAAGGCACAGAGGACAAATTCACCATTGAGGCACCAAACTTGGGTAAAGTGAGGAAGATCACCATTGGCCATAATAACAAAGGCTCTTCAGCAGGATGGTTTGTGGAGAAGGTTATTGTGGATGATATGGGAAACAAAATAGTGTATGAATTTCCAATCAATCGTTGGTTTGCCATCGATGAGGATGATGGGAAGATCCAGAGAGACGTTTTGGTGGGGGGAAACCAGCCCACAGGTATTGTGTACAACGTCCAGATTGTGACAGGAAACATCCGAGGTTCTGGGACCAACTCCAAAGTCCACATTGTGATGCACGGCTCCAAAGGCATGAAGAACAGTGGCAAGGTGTTTTTAGAGGGTGGAAAGTTTGAGCGGGGACTGACAGACATCTTCAATGTTGAGATTGCTGCGCTCCTCAGTCCCCTCAGCAGAGTCACCATCGGACACAACAATGAAGGAGTCAGTGCTGGGTGGCACTGCGAGAAGGTGGTGGTGTACTGTCCGTTCACAGGGATAGAGCAGACTTTCCCATGCAGCAAATGGCTGGATGAGAAGGAGGGAGATGGGCTGATAGAGAGAGAGCTCTATGAGATGGTCTCACTCAGGCAGAAGAGACAGAAGAAACACCCATGGTCCTTGTGGATCTGGACGTCAGACCTCCCCGGTGCAGGAACCGATGCAGATATGTCCTTCCAGGTGTACGGAGAGAGGGGCAAGAGCGATGCGATCAGACTGGACAACAAAACAGACAATTTTGAACAGGGACAAGTGGATAGGTTTATGGTTGAGCTGCCTGATTTTGGAAAACTGACCAAACTCCGTATCTGGCACGAGAAGAGAAATCCTTTTGCAGGATGGCATCTCAGTAAGGCAACTTTGATGAAGACACTGACAAAGGAGAAGTATAAGTTTCCTTGTGAGCGCTGGCTGGACACAAATGAAGATGATAACGAGGTTGTGAGGGAGCTACCTGCCACAGGAGACCTCATCGCTGAGCCGCTGCCCGTGATCAAATTCAGAGTGACAGTTTGCACAGGGACTACCGGAGGCAGTGGCACAGATGCGACTGTTTTTCTAAATCTGATTGGAGATCAGGGAGACACCGGAAATCGGGAGCTGGTCAACTGCAAAAACAACGTCAACAAGTTTGAGAAAGGAAATCTGGATGAGTTTATAGTGGAGGCAGTAGCCATTGGGCAGATCCGCAGGGTGAGGATTGGACACAATGGCAAAGGTGGAGGCTGCGGCTGGTTCCTTGATAAAGTGATTGTAAGAGAGGAGGGACAGGCTGAGGCCCACGCTGTGGAGTTCCCCTGCAACAGGTGGCTGGACCGCAACGAGGATGACGGACAGATTGTCAGAGAGTTAGTGCCATTCTCAGATGGACAGCGTCTTTACAacatAGGCTATCACATCGCGGTAAAGACAGGTAACATCTCTGGGAGCAGTTCAGACTCTAACGTGTTTGTCAAGCTCTACGGAGAGAAAGGCGACACCAGTACAATGATGCTGGTGGTCTCTGCCAACAACCTGGGGAACTACTTTGAGACGGGTCGCGTTGACATCTTCACAGTGGAAACCTTTGACATAGGACAGATCAACCGTCTGATGATTGGCCATACCAACGAAGGCATGCGTGCCGGCTGGTTCTTGGACAGCGTTCAGGTTATGGTTCCTGTCCAGGGAAAGCAATACATGTTCCCCAGTCATCGCTGGCTAAGCAAGAATGAGGCTGACGGCAAGACAGAGGTGGAGATCTACCCAAGCGAGATCCTGGACATAGAACAATTGATTAACTATGAGGTAACAGTAGTGACTGGAGATGTGTCGTTTGCTGGCACCAACGCCAGAGTGTTTATCCAGATCTACGGGGACAAGGGGAAGACAGAGGTCATCACGCTCGGAAGCAGATCCAACAACTTTGAGCGAAACACCACAGAAATATTTAAGATAGAGGCCAAAGATGTGGGGAAGGTCTTTAAGATCTGCATCGGTCACGATGGCACAGGGATCGGATCTGGCTGGTTCCTGGAGACAGTGGACGTAAAACATCTAATCATGGCTTTGGTGCCCaaggagaagaaaaaggaggacaagaaaaagaagaagaaaaagaaggaagatgaggaggaggaggaaggaggagaggagatgcaggAGGTGGTGCTGAATTATCATTTCCCCTGTTCGCGCTGGCTGGCCGGGGGAGAGGAGGACGGTGAGCTGGTGGTGGAGCTGCTGCCTCAGGATGCAGAGGACCTAGAAGTCAACACTTATGAAGTGTGCGTCTTCACTGGTGACACGCTGGGTGCTGGGACCGACGCCAACATCTTCATTAATATTTATGGAGAAAACGGAGACACCGGAGAGCGCTATCTAAAGAACTCTGACAACCTCAACAAATTTGAGCGGGGGCAGGAGGATGTTTTCATTGTGACAGCTGTTGATCTGGGTCCTCTGAAGAAGCTACGGATCCGTCATGACAATTCTCGGTCTTATTCAACTTGGTACCTGGATCGTGTTGAGATAGTGGACACAAAGGATGATACAACCTACTATTTCCCTTGTAACCGCTGGTTGGCAGTGGATGAGGACGATGGACAGATAGCAAGAGAGCTGGTCCCTGTGGACGAGGCCTTCATGAGgaaggatgaggatgaggaggggACAGCCGCCACTCTGGGGCTCGAGCAGAAATCCATGTCTACTACATatactatcaaaataaaaaccgGAGAGAAGAAGTATGCTGGAACTGATTCCAACGTCTTTGCTATCCTATTCGGAGAAAATGACGACACAGGGATCATCAACCTTAAGGCTTGTAAGAACTATAAGAATAAGTTTGAACAGGGGATGATCAATGAGTTCACTGTGGAGGCGGTGGATTTGGGCGACCTGGAAAAGCTTCGAATAGGGCACGACAACTCAGGGGGTTCATCTGGTTGGTTCTTGGACTGGGTCGAGATTGACGCCCCCTCACAGGGTCAGAGACTACGCTTCCCATGTGGCCGCTGGTTGGATAAAGGAGAAGATGATGGGGCGATTGTGAGGGATCTCTATCCTGCCGAGTTACAGACTGAACTCTACATACCATTTGTGCCTTATGAGATAAAGATATACACCAGTGATGTGTTTGGTGCGGGAACAGATGCCGATGTGTTTATAGTCTTGTACGGAGGCAAGGGAGTGTGCACACAGCAGAAACACCTGTGTGTcaataagagagagagacgtcTATACTTTGAGAGGGGAGCTGAGGACATGTTTATTGTGGAGCTGGAGGATGTTGGTGACGTTATAGAGAAAATCAGAATAGGACATGATAACAAGGGCACGAACCCAGGATGGCACCTGGACAGAGTGGAGATCAGACGACAGCTCAGGAAAGGAAAGGGTTCGGAGACGACCATTTTCCCATGTGAGTGCTGGCTGGCCAAGTCTGAAGATGATGGGGAGACGGTGAGGGAGCTGGTCCCTTCAGACATCATCACAGAGAAACTCCTCAGGGATGGGAAGCTGAAAAGGACTGAAGTTGAGGTGGAGGACGCTTTGGAAACTCACATGTACAAAGTTTCTGTGCGGACAGGTGATATGTACGGAGCAGGAACAGATGCCAACGTTTTTCTCACCATCTACGGAGACCTGGGAGACACAGGAGAGCGTAAACTTGCCAAATCTGAGACCAATAAGAACAAATTCGAAAGAGGAGAGGTGGACAAGTTCAGTATTGAGGCTGTTGACTTGGGCCAAGTGTTTAAGATACGTATTCGTCACGACAACTCCATGCTAGGGGCCGATTGGTACCTGGACCAAGTGGAGGTGCTGGATATGGAAACAGAAGAGGTGTACATGTTCCTGTGTGAGCGCTGGCTGTCGACCAAGAAAGAGGACAAACGCATAGAGAGGACATTTTTCGTCAAGGGGTATGAAGGTGAAAGAAACACTGATCCAAACTCCAAGAAGTTGCTTCAGGCCAAACTGGGGCTGGACAGAAACGCcaacaagaagaaaaagaaaaaaaaggtggcagtggtggaagaggGTCCAATCATCCCCTATCACTTCACCTTGTCCACTGGGATGGAGCGTGATGCCAGCACTACAGCCAGGGTCTATGTCATCATCATCGGCCCCAATGACGTCGAGACAGACAGGTTGTGGCTGGACCTGCAGGAGGGAAAGAAATCCTTCACAGCCGGAACTATGGACCACTTTGTGTGTTATGGAACTGACGTTGGCGAGATCAAGAGGGTGGAACTTGGCCATAATGGTGTCACACCAGAGAGCTGCTGGTTGGTGGATGAGCTGTCGGTTGCCGTGCCAACCAAAGGTATCAAGTACATATTTCCATGTAAGTGCTGGCTGGCTAAAGACAGGGGAGATGGTCTGACTGCCAGACTGTTCAATGTGCTGGACGCCAGCACGATCAACATAAACCGCAAAGTTATTTATTCGGCAACAGTTGTCACAGGTGACACTCAGTCTGCAGGGACTGATACTAACATTTTCCTGACGGTGTACGGAGCCAATGGGAGCACAGAGGAAATGCTGCTACCCAAAAATGAGGACAGGTTTGAAAGGGACCAAAAAGACACTTTTAGTTTGGAGATAGATGACATTGCTCCTCTAAAGAAGATCAGAGTTTGGATTGACGGTTCTGGAAGTCGCCCTGACTGGTTTCTTGACAGGATCCTGATGCGGAACCTGAGCACAGACGAGATATATATGTTTACCTATGAGAACTGGCTGTCAAAGACAAAAGGGCCAAAGAGGACAAAGGTGTGTGAGCTGGCAGCTTTGgtggatgaggaggagatggTGGAGAAAACAACCTACATCATCCAAGTCCAGACCAGTGATGTTGGAGGTGCCGGCACTGACGCCAATGTGTTCGTGATGGTGTTTGGGGAGTATGGGGACACCGGGACACTGCCTCTAAAGGAGAGCACCAACAGGAACAAGTTTGAGCGTAAAATGAAAGATGTGTTCAGATTCCCTGACATGCTCAGTCTGGGCGAACTGTCAAAGGTCCGAGTGTGGCACGATAACAAAgGTCCTGCTCCTGGTTGGCACCTGGAGTACATTGACGTGAAGGATGAGGCCATGGACCAGACCTTCAGGTTCCCCTGCGACCGCTGGTTTTCTAGAAATGAAGATGACAGGCAGATAATGAGGGAGCTGGCCTGTGCCAACAACGACTCCATAGACCTCAGTGACAAAACCAAATATGAAATTGCCACAACAACTGCTTACACAGACGACGCCTCCACCACGGAAAACGCCTGGATTGTGTTGGAAGGAAGGAAAGCTCGTTCCAAGGAGTTTGTTCTggagaataagaaaaagaagttCTTATGCGGTGCCACTGACAAGTTTGAGTTCTCGTCCAAGCACGTTGGGGAGATTGCCGGCATCTGCATCGGCCACATAACAAAAGACGGAAAGAAGGTGAAGAAAGAAGCCTTCTGGCACGTTTTGGAGGTGGTGGTGACAGAAAAGGAGCTGGGAAACAAGTATTTCTTCCACTGTGATGCACAAATCCCCCTGGCAGCCAAAAAGGACCAATTCCTGACATTTGAGTGCTCTAAGTCCATTGAGAGCTTCGCGAGCAAAGTCCGCAACCTGGTCCCTGTCAAGTATGAAATCATCGTCATTACTGGGGATCTGAAAGGAGCTGGCACTGACGCCAACGTTTTTATCAGCATCTATGGTGTAAATGGTGACTCCGGCAAGCGGCATTTGCGGCAGACGTTCCGCAACCTTTTTGAGCGAGGGCGAACAAACCGCTTTGTTCTGGAAATGCTGGACCTCGGGGAGCTGCTGAGGGTCAAAGTGGAGCATGACAGCACCGGCTGTGGGTGTGGGTGGTATTTAGAGTGTGTGGAGGTGACCAACACGGCCAACTCAGTGACAACCATCTTCCAGTGTGCAAAGTGGCTGGACACTGGTAAAGCCGACGGGCAGATTCAGCGTGTGCTCTACCCCAAATATTAGGTGGAGGACAAAAAGTGGGGGAACATTCCTTTAGAGACTTATTTAGCATAGCTCGTCTGCATGGTAGAGGAAAAAGATTGAAATTAACAGAACAATATGTACCTTAGTGTCACCTTCTAAAGGAACCAACAATGTTCTTTTTTAAGTTTGTGCCAACTGTTTAGGTTGCCCCTCTTCTAACGTCAGAGAAAGCCATTTGCCACCTCTCTTGTTCAATTTGAAAAGTAAAGCAAATCACACCTGAATATTGCCCAAAGCAGATGAGAGTCTGTCATAGTCACATGCTTCAAAAAGTCCACCATCATTCCTGTGCCCAAGAAAACAAGACCAGCCTTCCCGCTCTCTTATACGCAGgcttggggagtaacggaatacatggaACGGCGTTACGTTATTAGGATACAAAAAAAGGTACATAACTGTATTCTGTTAAAGCTGTGGTAAACAATATATTTTTGTCATCGTAATCTTTCaaaatattgtaattcaagtggtctgagagaaaactagacttctgcgtTTCCTCTTGGCtttgttttcaggctttagatAGTCTAGCTGTGACAGAAGTCTTTTGCCAATTACAGGTCATTtcggagagagggagagcattCCTATTGACTGTTCTGCACATGCAAATTACCGTGCAACAGAGAGGGAAAGCTTTTTGCATTCTAGATGTAATTGGATTACCGATACATTTAGTAAAAATGGGGATTATTAACAGgattacaattttaaaacacattttaaaataaaggaCGATATACTACTGTAGCCGAGCGTTATGAGTGACGCGTATACTTATGAaggtaataaaaataataatgaggCTTTGTAGTCTGAACCAAGGTGACACATTGTCAACGGCATCGCATTACAGCTCTACCGTTCTGTTCtgacctttcacaataaaagccctttGCTAAGAGACAACAAAATAGCTTACTACCATGCACATGCACAACCACTACACTTGACAAGTATCACACAACAACACTCTGGTCTCGAAGGAAACCAATGTTATCATGTGTTGTGCACTTTCATTGCAGGTCTATAGGCTACTGCCTGAATTTGCCTCATGCTAAGTAGTATTTTAAAAATACACTGAGCAGAGGACACATTTTTTTATGCTAAAAATCTTGGTTTTCCCATTTTCTTTTCTAAAGTTACATTGTTCGGTTGTCTTACAGAATACACAAATGTGTATTAAGTTTAAATAAAAGTCATCATATTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86090 lncRNA upstream 81830 24876562 ~ 24892517 (+) True G64287
TU86081 lncRNA upstream 111617 24860249 ~ 24862730 (+) True G64279
TU86075 lncRNA upstream 151296 24822491 ~ 24823051 (+) False prxl2c
TU86072 lncRNA upstream 151999 24821314 ~ 24822348 (+) False prxl2c
XR_005639412.1 lncRNA downstream 34245 25034709 ~ 25040898 (+) True LOC120560056
TU86234 lncRNA downstream 209460 25209924 ~ 25210170 (+) True G64392
TU86313 lncRNA downstream 259252 25259716 ~ 25302920 (+) True G64450
TU86352 lncRNA downstream 505700 25506164 ~ 25506568 (+) True G64489
XR_005639499.1 lncRNA downstream 547559 25548023 ~ 25552264 (+) True LOC120560635
XM_039804129.1 mRNA upstream 11869 24958162 ~ 24962478 (+) True ptger4a
XM_039804591.1 mRNA upstream 25820 24935660 ~ 24948527 (+) True mrps27
XM_039804602.1 mRNA upstream 41753 24924529 ~ 24932594 (+) False znf366
XM_039804601.1 mRNA upstream 41753 24924530 ~ 24932594 (+) True znf366
XM_039803215.1 mRNA upstream 73377 24895062 ~ 24900970 (+) False smyd1b
XM_039802720.1 mRNA downstream 18605 25019069 ~ 25023688 (+) True LOC120560335
XM_039802788.1 mRNA downstream 79843 25080307 ~ 25088646 (+) True ostf1
XM_039804582.1 mRNA downstream 107493 25107957 ~ 25139788 (+) False atxn2
XM_039804587.1 mRNA downstream 107493 25107957 ~ 25139788 (+) False atxn2
XM_039804585.1 mRNA downstream 107493 25107957 ~ 25139788 (+) False atxn2
XR_005639471.1 other upstream 139716 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 139727 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 1281056 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 2044142 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 3375548 21588876 ~ 21598799 (+) False LOC120560787
TU86491 other downstream 684508 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 913918 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 1412405 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 1493871 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 1493871 26494335 ~ 26496328 (+) False c6h22orf39

Expression Profile