RNA id: XM_039804136.1


Basic Information

Item Value
RNA id XM_039804136.1
length 4201
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC120561159
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 223141 ~ 244194 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCATTCATTTTGGCTCGTTTAAAAGAAGACCTGGTATAAGACTGACAACGCCAGAACACAGTTGCTATAGCTACTGTTTCCCAGACCGTGTGGCCCACTGTGTTCAACCTACTGGACTGACTAGGCTGCATGGTGCGCGCCTGTGTCGCGCGCTACTGGTGGGCTGTGCTCCGTCACGCGCCGAAGGTGCCATGAAATGAAGAAAACTCACTTGCGGAGGGAAGGAGCATTATTTATAAGAGCGTGTATGGGAACATAGGAGAAATTTGATTAATAGCTTAGGCCTACTCGACTGAAaatggctaaaaacacatctctttatTTTAGAATTGTCGAGGGCAGGAACCTCCCGGCCAAAGACGTCTCCGGAACCAGTGATCCATACTGTATTGTAAAAGTTGACAATGAAGTTGTGGCCAGcTATGATGATGTTATTGGAAAGATAACTCTGAGCAAAGAAGCCATTGGCTCTCAAGCTAAAGGACTAGATTGCTGGCTGAACCTGACCAGGGTCGACCCGGACGAAGAAGTCCAGGGAGAGATCCATCTGAGTCTGGAGCTGCTGAAAGTTACAGAGAAGATTAGCCTGCGATGTCAAGTCATCGAAGCCAGAGACTTGGCTCCGAGAGACATTTCTGGAACCTCTGATCCATTCACAAGAGTTATTTTCAACAACCACAGTGCAGAGACCTCGATTATCAAGAAAACCCGTTTCCCTCACTGGGCAGAGACCCTGGAGCTGGAGCTGGATCCAGAGGAGCTGAGTGAGGAGGGGATTGTCACTGTGGAGGTCTGGGACTGGGACATGGTGGGCAAGAATGACTTTCTTGGAAAGGTGGAAATCCCTTTTGCTTGTTTGTACAAGACACCTCCGTTAGAGGGCTGGTTCCGTTTGCTTCCCCTGGGAAACAACGAGGTTGATGCTGGTGGCAAGCTGGGGGCGCTGCGTCTGAAGGTGCGTTTGGTGGAGGATCGGATCTTGCCCTCTGTGTACTATCAGCCGCTCATTCACCTTCTGGTGGAGTCAGTCATCTCCCCAACAGAGGTGGAGGATAGCAGTGCTCTGACCATGCTGGAGGAGGTGAACACGGTTGAGAGCCGGCAGGATGTGGCGATGACCCTGGTGAAGATCTACCTGGGCCAGGGCCTGGTGGTGCCATTCCTGGATTACCTTAACACTCGGGAGGTCAACCACACCACTGATCCAAACACTTTATTTCGCTCCAACTCCCTTTCCTCCAAGGCTATGGAACAGTTCATGAAGGCTGTTGGCATGCTGTATCTGCATGAGGTGCTGAAGCCCGTCATCAACCGCATCTTTGATGAGAAGAAGTATATTGAGCTGGATCCATGTAAGATCGACCTGAACCGCACAAGGCGAATTTCATTTAAGGGTGCGGTGTCAGAGGCAGAGGTGCGGGACAGCAGTGTGGAGATGCTGCAGAGCTACTTAACCAGCATCATTGAATCAATTGTGGGCTCAGTCGATCAGTGTCCTCCTGTCATGAGAGTGGCCTTCAAACAGCTACACAAGAGAGTAGAGGAGCAATTTTCTGAACCTGAGAACGAGGATGTGAAGTATCTGGCCATCAGTGGATTCTTTTTCCTGCGTTTTTTTGCTCCTGCAATCCTCACACCTAAACTGTTCCAGCTGAGGGATCAGCACGCTGATACGCGTACAAGCAGAACGCTGCTACTGCTGGCAAAGGCATTGCAAAGCGTCGGGAACTTGGGGCTACAGCTGGGTCACGGAAAGGAGCAGTGGATGGCGCCTCTTCATCCCATCATCCTACGCAGTGTGGCCTCTGTCAAAGACTTCCTGGACAAGTTGATCGACATAGATCATGACATTGTGTCTGAGGTGCCACAGAGGGCTGTATTCATGCCCTCAGTCACGGTTAAAGAGGGGTACCTCCACAAACACAAGGCAGAGGGACCCCAACTGCTATCCCGCTTTGCCTTTAAGAAACGATACTTCTGGCTGACTAGTGAGACGCTGTCCTACGCCAAGACGTCTGATTGGCAGGTGCGCTCCTCGATCCCTATTCGCTGCGTGTGCGCCGTGGAGAGGGTGGATGAAAATGCCTTTCAGCAGCAGAATGTAATGCAGGTCATCACCCAGGACAACGACGGGCAGCTGCACACCATGTACATCCAGTGCAAGaATGTGAACGAGCTGAACCAGTGGCTGTCGGCTATCAGGAAAGTCAGCATCTACAATGAGCGCATGCTGCCCTCTTTCCACCCAGGGGCTCATCGCAGCGGCAAGTGGACCTGCTGCCTGCAGGCGGGCCGTGCTGTTACAGGCTGCAGTAGAACCCACTCAGCTGTGACCCTGGGTGACTGGAGTGACCCGCTGGATCCCGACGTCGAGACGCAGACGATTTACAAGCAGCTCCTCCAGGGCAGAGACAAACTCAGGAAAAAATATGTGGAGATGCCAGACGCTGATCAGACGTCCAGCAATAAAGAAAAGATCAACTGTGACGCTCACCCAGATGGTGCAGAATGCAATGTTCAGTTGTCGAAGCCAGGTCCAAGCGTTGCTGCTCGGCTGTTGGCGGTGATAGAGGATCTGGAGCAGGCTCACGCCACTTTCCAGCGGCGAGAAATAGAGGAAGGCACCAGTGTCATTCTGAATCTCTAGACTCGACACAGACTGGGATCCACTACTAATGCCTGAACAGAAGGGGGGTGCCCCAGCATCCTGTACCAACATGAGCGAGCATCAGAAAGTCACTCTCTCGACTGTGAGGGAGACAAAGTGGCCACAGGGTGCAACCTCTTCCAGCTTTTTAGTACATTCCCCCAAAGGGCAGAGGGAATTCTGCCACTTTAAATCTCTTTGTATTCTCTAAAGTGCCACCAACTTCAACAGCGCCGGGGAGAGAGCATGATACTTGGCGATAAAGGGGGGGCGAGGGACTTTGAAGCACGATCTGACTTGATATTTTTCATGTAGATAACAAGCAATCTCCTGCATGGCCTGCATTCAACCACTTGttgtgaaatgtgaaaaaaacaagCTTTTATATTTTGAGATACTGTACGTGGACTCAGTCAGGTTCACACATTTTTATGCAAAAAGCTTGTTGTAGTGTAATCTACAGTACCTGAATGTAAGGtgttttgaaattgtttttatcaatgttttgtattttattgagGCAATTTTTCACATGTAGCAGTGACATTGTTATAGGTCATACCACCATTAGTGTATGAAATGCTGTTGCACATGCCACAGTATAACGCTGCTTGTACAGTGAGCAAAACTGAATATTATTTTAATCGTTGCTTTGGTCCCTTTATACAAAACAATGTGCTTTTGTTTGGTGCTAAGGCCAGCCAACTTAAATGTTTGGTTCTGATGTAATTTGCATTTTTAGAATGTACTTACACTCGATGTAGCCATATATGTTATAAGGGTAACATTTGATTTACCTGGTAATATAAAGTTCATACATGTAACTGAGGCAATATAAATAACAATGTTAGGGTTAGTTTTTCAATTTGATAAGTTTACATTTTCTTGAGATTTGGGGGGTTGTATTTGGCTCACAGATGTCAGGATATGTTTGAAATgccaaatttgtttttaaaaatgtaggtGCTtcaaaattcataaaaaaaaaagttttttaaatgatttttgaAGCACTCAAATCACGCAATTTCTTTGACATATCTGTGACACACAGCTGTACATGGACATGTTGGAAAGCCATTTCCCATAGAGCGAGTAGTGTGGCTGTCTTTCCCTtaaacagagaacagagaaggTCAGTGAGTGTAATGGAGATCAGATCTGTGATCTCACAGGCCACCCTCCCTCTGGAGCTGATAACATATTACATTATAGCTACAGCTAGTGTAGCGTCTGTCTTTCTTTTAGAGGAAGAACCGTGGCATATTTATGTGTGGAGGAAACATTCCTTCTGCTTTTAGATGTTACACTATAGCACACATGGCAGACATGacaattaatattttacattctcGACTAAACTAGAGTAAACATCAGATGTCGCTTGAGGACTTGATATTCCCTGAGTGagggcttttattctgaaaaaagaaaagaaaaacactaccGCCTGTACTTCACTTTGCAAATACACTATGATGGCTTGTTCCAAGTGGATTGTTACTGTGAACTAAACACAGCTGTATTATTCAGTAAACTATTATTTCAGCAAA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639514.1 lncRNA upstream 10974 210756 ~ 212383 (+) False LOC120560799
XR_005639515.1 lncRNA upstream 10974 210756 ~ 212383 (+) False LOC120560799
TU77996 lncRNA upstream 12681 209281 ~ 210676 (+) True G58011
TU77970 lncRNA upstream 97094 121847 ~ 126263 (+) True G57994
XR_005639491.1 lncRNA upstream 113296 108566 ~ 110061 (+) True LOC120560560
TU78015 lncRNA downstream 1697 245891 ~ 252072 (+) True G58021
TU78020 lncRNA downstream 13374 257568 ~ 259697 (+) True G58024
TU78074 lncRNA downstream 297696 541890 ~ 572532 (+) True G58057
TU78181 lncRNA downstream 592385 836579 ~ 837861 (+) False lmx1bb
TU78179 lncRNA downstream 635060 879254 ~ 882251 (+) True G58151
XM_039803649.1 mRNA upstream 6858 213036 ~ 216499 (+) True LOC120560800
XM_039802738.1 mRNA upstream 36013 183677 ~ 187344 (+) True ccdc157
XM_039802740.1 mRNA upstream 36013 185080 ~ 187344 (+) False ccdc157
XM_039802739.1 mRNA upstream 37845 183677 ~ 185512 (+) False ccdc157
XM_039803188.1 mRNA upstream 123853 79791 ~ 99504 (+) True LOC120560558
XM_039803834.1 mRNA downstream 96783 340977 ~ 356353 (+) False syn1
XM_039803830.1 mRNA downstream 96783 340977 ~ 356353 (+) True syn1
XM_039803831.1 mRNA downstream 96783 340977 ~ 356353 (+) False syn1
XM_039803832.1 mRNA downstream 96783 340977 ~ 353183 (+) False syn1
XM_039804336.1 mRNA downstream 123187 367381 ~ 376915 (+) True unm_hu7912
TU78000 other upstream 10987 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 2634207 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 3873085 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 4179947 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 4187977 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 4188474 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile