RNA id: XM_039804144.1


Basic Information

Item Value
RNA id XM_039804144.1
length 2862
RNA type mRNA
GC content 0.45
exon number 18
gene id LOC120561163
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 21393773 ~ 21403390 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTACGTAATGTAGTTTCAAAGGTTGTGTACATTTTTCGGACTACACGCCTGAGGAACATAATGTGACAGTAAATTCAGACAGTTAACCGCTTTACAAGCTTCAGCCTGAGAGAAGAAACTCAAAAGTGTATTATTATGAGTTCCTGATGTCTGTCTGTTGACTCATCACTATGAGTGGTGCTGCGCTGGCTGTTGTGGTTGTAGTTGTTTTCCTCTTGGCCCTCTACCTCCTCCAGCGCTATGGAGACTTGCGGAGGCAGCAGCGGATGGTCCTGTTGGGAACGCTGCTGTCCTGGTACCTCTGCTTCCTCATCGTCTTCATCCTGCCACTCGACGTCAGCACGACCATCTACAAGCAGTGTATTCTTGACAATGCAAACCACCCTGCTCCTGTAACTCAAGCAAGACACACTAATCAGACAGAGAGCAGATCCTCTGTTTATCCAACTGTCAGTCTACCAAAGGTTTGTGAGGAACCATGGAGTTATATCCCAGATGGCATCCTACCAGTGTTGTGGAGAGTTGTATACTGGACATCCCAGTTTCTTACCTGGCTGTTGTTGCCCTTCATGCAGTCTTACGCACGATCAGGATCTTTCTCCAGAGTTGGAAAGATTAAGACAGCTCTCATTGAAAATGCTATCTATTATGGCACCTACCTCCTTATCTTCATCTCTCTGCTCGTGTATGTGGCTGCTCACCCACAGTGGCAACTCACATGGAGAGAGCTCCAGACCATCGGCATTACAGCCGCCAACACTTGGGGCCTCTTCCTTCTGGTGCTGTTGCTAGGCTATGGCCTGGTGGAGATCCCGCGTTCTTATTGGCTCTCATCTTCCCACGGTTACCTGCTGGCCAAGACCTACTTCAAGGCAGCAAAAATGGCTACTGAGAAGGCATCGGCTGAAGAGAACCTAGCAGATGTTATGGAGGAGGTGGCAGGCATCCATGGATCTGTTAGGTACAACCACTGTCTCAGGAAGTGTGTGGACACTATTATTGCAAAGTGTCCCACTGAGTACCAAGAGGAGATGGGAAGAAATGTGGAAAGCTCTTGTGGTGAACAGAATGCCCTTCCCACCAAAAGAAGCCTGAATAAGcttcataaaaaagTAATCTCTGCAGTGCAGAGGCACAGTCAGACTCAGGTACAGTGGTCCATCTTGTTAGACCAGGCCTTTCATCTAGAAGATGTAGCTGAAAGCCAGAGCAGCCCGGTCCGACACTTCAACCACAGCTTCCCCTCAGTACGCCACCACAGCTGGATCTATCGCTTCATCTACACTCCTACTGTGGagtgGTACTGGGAGTGTGTGTTAAGGCAGGGTTTCTACAGGCTGCTGGCAGTTCTCCTGTGTCTACTCTCAGCAACAGTTGTTTGGTCCGAGTGCACCTTCTTCAGCACACACCCTGTCCTCTCCCTCTTCGCTGTCTTTGTTCAGATggcggaaaaacaacacaactacATTTGTATCGAGATGGCGTGCTTTGTCAGTATActcttcctgtgtgtctgtgtctactCCACAGTATTCAGGATACGAGTTTTCAACTACTATTACCTAGTGCCCCATCACCAGACTGATGCTTACAGCCTGCAGTTCAGCGGCATGTTGTTTTGTCGTCTGACCCCTCCTTTATGCCTCAACTTTCTGGGCCTGATTCACATGGACTCTGCCATCTCACACCAGGACCGAATACAGACATCCTACACCTCTATCATGGGTTCTATGCGTGTGCTATATTTCATATCTGATGGGTTCTACATCTACTATCCCATGCTGGTATTGCTACTTTGCTTAGCCACTTTTTACAGTCTGGGCTCTCGCTGTTTGAACCTCCTCGGCTTTCATCAGTACATCACTGACGATCACTTGACTTCTGACCTGGTGGATGAAGGCAGGGAACTCATCAGAAGAGAAAGAAGAATAAAACAGAAGGCTGAGGATGGAGAAAATCGAAGATGGgCCTGGAGGGAGCGGTATGGAGTCCAGGAGGCAACTGGGCGGACCAGAGGTGGTTACACTCAGCTGAAGGATAACCAGAGCAGCCCTGTCACAGAGATCAACAATAGTGTTACCCCATTCACCagaagagatgaggaggaggaggagcagagatGCTTACTGCAAGATAATTCCAGTTATGAAGGTTCACCAAACAGAAGATCCACAGGAGGACGTTACCTGTCTCTGTCACCTTCTCGGACAGGCATCTTTGACAATGTTTGATAGACAAAAGACATGGAGggagaacaaaaaaaagctaGTACATGCTGGAATTGGAAAAAAAGGACTAAAGACTTCTTGAGTGAAGTCTTAATGCAAAGAATTATACAGTATCTCAGGAAGTAAAGAGGAAGATCATGTATCTGAGACATGGACATACAATCACTAACAATCATTATTAACTGAAAGAGAATACTGTGATTAACCTGTTTGTGCACAGCCAAACCCTTTTTGATGTATTTTTGATATTGCCTTTCAaacaatattgatttatttaagtgTAGATTGATGGATGAAAGACATGAATGGCACAGTTATGCACTTGCAGTCATTTAGGATAACCGCATATGATACACAAGGAAATGTATTGCTGTCTGAATATTTCACCATAAGAGTTgacatattttatgttttaattaaacatctgtgaaaacactgaaacaaaaacaagtcaAAGATATCAACAGTGTAATGTATTTCTTGTTGGATATTTTGTGCTCCGAAAGAAATGACTTGTTTGTATGTAATGTAGTCTACAAATACCTATTATTTTCTGTATGTATATTTTGTctttatgttttgtattgtgtgtctaCCATGATAATGCAATTAAACATAAGTTAACCCATTTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85205 lncRNA upstream 46256 21346367 ~ 21347517 (+) True G63576
TU85165 lncRNA upstream 79682 21312753 ~ 21314091 (+) True G63545
TU85120 lncRNA upstream 171122 21164816 ~ 21222651 (+) True G63511
TU85076 lncRNA upstream 732616 20660840 ~ 20661157 (+) True G63471
TU85070 lncRNA upstream 746276 20646192 ~ 20647497 (+) True G63468
TU85260 lncRNA downstream 76390 21479780 ~ 21484666 (+) True G63627
TU85261 lncRNA downstream 83379 21486769 ~ 21487038 (+) True G63628
XR_005639467.1 lncRNA downstream 205433 21608823 ~ 21620711 (+) True LOC120560273
TU85279 lncRNA downstream 212833 21616223 ~ 21618602 (+) True G63641
TU85373 lncRNA downstream 441442 21844832 ~ 21845138 (+) True G63714
XM_039803803.1 mRNA upstream 111265 21278402 ~ 21282508 (+) True LOC120560913
XM_039802570.1 mRNA upstream 343924 20849986 ~ 21049849 (+) True si:ch73-72b7.1
XM_039802571.1 mRNA upstream 343924 20849986 ~ 21049849 (+) False si:ch73-72b7.1
XM_039802572.1 mRNA upstream 343924 20919639 ~ 21049849 (+) False si:ch73-72b7.1
XM_039803737.1 mRNA upstream 841954 20499130 ~ 20551819 (+) True stpg2
XM_039803624.1 mRNA downstream 573 21403963 ~ 21410730 (+) False golm1
XM_039803623.1 mRNA downstream 574 21403964 ~ 21410730 (+) True golm1
XM_039802852.1 mRNA downstream 24953 21428343 ~ 21458347 (+) True agtpbp1
XM_039802853.1 mRNA downstream 24953 21428343 ~ 21458347 (+) False agtpbp1
XM_039802854.1 mRNA downstream 24954 21428344 ~ 21458347 (+) False agtpbp1
TU85087 other upstream 715857 20676417 ~ 20677916 (+) True G63480
XR_005639482.1 other upstream 904935 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other upstream 904935 20477812 ~ 20488838 (+) False wdr31
TU84360 other upstream 1944823 19434907 ~ 19448950 (+) False rasl10a
XR_005639481.1 other upstream 2712612 18661157 ~ 18681161 (+) False acacb
XR_005639510.1 other downstream 185486 21588876 ~ 21598799 (+) False LOC120560787
TU85622 other downstream 1526509 22929899 ~ 22930205 (+) True G63905
TU85875 other downstream 2289272 23692662 ~ 23693291 (+) True G64108
XR_005639471.1 other downstream 3420328 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other downstream 3420329 24823719 ~ 24834620 (+) False cdc14b

Expression Profile