RNA id: XM_039804148.1


Basic Information

Item Value
RNA id XM_039804148.1
length 3627
RNA type mRNA
GC content 0.48
exon number 7
gene id klhl22
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2192912 ~ 2203066 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTGAGCTAACTGCCCGACACCAAAAAGTAAACAGACTTGTTTTGATCTGTCAAAACATCATGCGACTGCTGTAGCAAAACGAATTGGGTGTCCTTGTGACCAAACTCTTAATATAAAACGGTTTGTATTTGATGATCGCGACTATATTTTCGAGCAGTCGTTGTGTTTCAATTTTTAAGTGTCTACCTTACGGTTTTTATGGTGCGTTACAGCAGCTAGCAGGCTAACCAGCCGATAGCTTACTAGCTTATGCTCTTCACCGTTACAACTAACTTAACATTAGCGGACAGCGCAGTGGCAGCTAGCAGTTCGTCGAGGGAAGGACGTATGTAACTGACGTTATACTTTCATATCTTTGTAATTGCTTTGTAGATAAAGTTATGTCGTAAATTGCGTGTAGTATTTCTAGCTACATCTGTAGCGTTACGTTACAAAGTGACATTTCAAGCAACCTTAACCACCCTTCTTTAGCCGCTAGCTGCCCAGCCTATTCCTACTTTTCCTGTATATTTCTCTACATGCCAACAGCAGAATGTGGTTCATATTAATAACAACAATGTGAAGGAATACGTAGAGTGGTGTTAGTACTAAACAGATAAAAGTGATGAAGCCTGAACATCGATACCCTGCCATGGCTGAGGAAGGAAAGCGGAGTCCTGGCCGCCTGAGCCGACAGACCTACAAAAGTTCAGCCCATTTCTGCAGCCTGCTGGACGGCCTGCTGGCTCTCAGAGAAAGTGGCATCCTCTTTGATGTGGAGCTGCTGGTGGAGGGTCGAGCCATCAAAGCCCACCGTATACTTCTGGCAGCCTCTTGCGATTATTTTAGGGGAATGTTTGCTGGAGGCCTTCGCGAGACACAGCAAAAGGAGATCCCAATTCATGGAGTATCTTACATGGCCATGAAAAAAATACTGGACTACATCTACACTTCCGAGATCGAGTTAGACCTGGAGTGTGTGCAGGAAGTCCTGATAGCCGCCACACTAGTACAGCTTGAGATTGTCATCGGCTTTTGCTGCGATTTCCTTTTCTCCTGGCTGGACGAGAGCAACATTTTAGAGGTCCACAATTTAGCTGATCTCTACGGACTGCAACAACTTAATGCTAAGATCCACTCCTACATCCTCAGGAACATTCAGACTTTGTCTCGCACCGACGTGTATCGAGAACTCCCCCAAGATGAAGTCTTCAGCGCGCTGAGCAGCGACGAGCTTCAGGTGAACAGCGAGAACGAGGTGTACGAGGCGGCTCTTCACTACCACTTCAGTCCGTTGCAGGTGGAAACTGACCAGGTGTACTTGCAGGTCAGTCCCAAGGACAATCTCAAGATGCTCGATGCTGTGCGTTTCTGCCTAATTGAGAAGCAAGTGTTGCAGAGGCTGCATGGCCGACTGCACCAGTGTCCACTGAAGGATTGTGTGTCAGCTGCACTGCGATACCATGAGCAGGAGATCTGGCAGCCCGTCCGGCAGAGTCCTCTCACCCAGCCACGCTCCATCTTCCACTGCATATTGGGCTTCGGCGGGATGTTCACCTCCAGCTCCCTCACAGAAAGCGAGCATTTGTTTCAGGTGTTCCACCCGAGCTGGGGGGAGTGGAGGACTCTCACTGCAGCTCACGCCCCCAGAATGTCCAACCAGGGCATCGCTGTGCTCAACAACTTTGTGTATCTGATTGGAGGAGACAAGAACACCAGTGGATTTCGTGCAGAGACCCGCTGCTGGAGATACGACCCTCGTCACAACAGCTGGTGCTCCATCCAGCCTCTGCAGCAGCAGCGGGCCGaccactgtgtttgtgtgatgggCGGCCATATTTATGCCATTGGAGGACGGGACTACAGCAATGAACTGGAATCAGTGGAGCGCTATGACCCGCACTCCAACACGTGGGAATGGGTTTCACCCCTAAAGAGAGAGATTTACGCCCATGCTGGAGCAGTGTTGGGCGACAAAATGTACATAACATGCGGGCGCAGAGGAATGGCGTACCTCAGAGAGACCTACTGCTTTGACCCGGCGGCCAATCATTGGACAGGATGTGCTGAGGGGCCGGTGGAGCGAGCGTGGCATGGCACGGCTGCGGTTAATGGACGCATTTATGTTATCGGCGGAAGCAACGATGAGCGTGGATATCGGCGGGATGTCCTGAAGgtgGCGTGCTTTAACCCCGAAGCCAGCTCTTGGTCTCTACTGACCCCTCTCCCCGCAGGACATGGAGAACCCGGCATAGCTGTGCTGGACAGTCGCATCTACGTCCTGGGAGGACGCTCTCACGACAAAGGCAACCGGATGAAATACGTTCACGTGCTGAACACCGACGCCGACGAGTGGGAGGACGAGACGGAGTTTAAGGAGCGCGTCTCTGGCCTGGCGGCTTGCGTGGCGCTCATGCCCCCCGCTGTGATCGCACAGGCCAGGAGCTGGGAGCAGCGCACCAAGGCTTCGTGGGAGGACGTGGACTTGGACAACTCGGGGGACTCCAGTGAGGATTGAAGCAGCTGTTGTGAACTGAATGTCTGAGCACTGGAGACGCCCACTGGAGTACCTGgaggaatttttttttgcagcatcGCTTCCACGTTGCACGTTGACCACTTTGAGTGCCTCGGGAACCAAAGTGTCATTCAGGACCTTTGCACACTTTTTGTTACTTTTCAAATATCTTCTTAGATAATTATACTCCGCCCCTTGAGTCTCTGCTATATATCGCCGATCCCTTAGAGTCATTATCACCTGTCACTGTAGCTGCCTCTGCGTTGTTTATCATAGAGAGAATTTCTTCCATATCTTCAAGTGACAGAAATCAGCGAAGACTGCTGGCTATGCAATAACATGGTAATATGGAGTGCTCTCATCAGACTTTAGTTCCTATCTCTCCTTTCTACCAGCTACTGGTTATCGCCAGGAACTCCCAACGGAGTTATCTTCCCTTCCGAGCTACTGAGTAATCATTAAGTCGTTCAATTTTAACACTGTGCCTTGTTTTTGTGGTTACATCCTGACCTTTTGTTGTGAAgtgacattttttacatttcggTGTATTCTGTGGGTGGAGATGGAGCCTTGGGTCCTGTGCCTCGCTTGGACATCACAAGTtgttgaattattattttttttaagttgatttgtgtttgtacGTGACTGATGAGGCGCTGGTGCAGCAGGTTGTAGTACATAATGTTGCCATGTCTGTAAAGGATTTCTTGACTTTTTTCGTGTGATGAAAAACCAAACCACGGTAGTATATTTTGTTGTGTCCTGTCATTGGTCTTTACCGAATATGTTATTCCATTACTGAATCCAAAAAGCACAACGTCGAGTAGTTTTAGAATGTTTCTGTTTGTCGAGTCGAGCTTTTGCTCCACGCTTCAGCTTGTTGCCTCTTCTTACGCTGTTTATTAGATGCATTCAAGAAGCTTAATGACACGTCCGCTCCACTGTGTATCCTTTTCCTTTTCGTcattggaagaagaaaaaaaaaactccaggaACAAGTCTGTTTCGAAAAtgtacttttctttttcctacAATGAGAGTTACGTCTTAAGAATAACAAATGCAGTGTATTAAAACAAACCGTCACACAAGATATGCAAACTTTAATAAAGATGGTAATATATGG

Function

GO: NA

KEGG:

id description
K10459 KLHL22, KELCHL; kelch-like protein 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78625 lncRNA upstream 60638 2131948 ~ 2132274 (+) True G58478
TU78501 lncRNA upstream 103119 2074820 ~ 2089793 (+) False G58382
TU78502 lncRNA upstream 103119 2074820 ~ 2089793 (+) True G58382
TU78516 lncRNA upstream 121429 2067585 ~ 2071483 (+) True G58390
TU78510 lncRNA upstream 129910 2062691 ~ 2063002 (+) False G58384
TU78714 lncRNA downstream 106284 2309350 ~ 2312665 (+) False dock5
TU78740 lncRNA downstream 233318 2436384 ~ 2437472 (+) True G58574
TU78766 lncRNA downstream 320373 2523439 ~ 2523638 (+) True G58597
TU78767 lncRNA downstream 320575 2523641 ~ 2523934 (+) True G58598
TU78768 lncRNA downstream 321141 2524207 ~ 2524567 (+) True G58599
XM_039803644.1 mRNA upstream 32285 2157612 ~ 2160627 (+) True LOC120560792
XM_039803640.1 mRNA upstream 36323 2140097 ~ 2156589 (+) True kctd9a
XM_039804564.1 mRNA upstream 138431 2037572 ~ 2054481 (+) True ccdc92
XM_039804565.1 mRNA upstream 138431 2040539 ~ 2054481 (+) False ccdc92
XM_039804614.1 mRNA upstream 244644 1805953 ~ 1948268 (+) False ncor2
XM_039802356.1 mRNA downstream 59843 2262909 ~ 2266743 (+) True LOC120560154
XM_039803547.1 mRNA downstream 70612 2273678 ~ 2310174 (+) True dock5
XM_039804521.1 mRNA downstream 162684 2365750 ~ 2434942 (+) True LOC120561412
XM_039804522.1 mRNA downstream 162684 2365750 ~ 2434047 (+) False LOC120561412
XM_039804523.1 mRNA downstream 162684 2365750 ~ 2418169 (+) False LOC120561412
TU78000 other upstream 1980542 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 675335 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 1914213 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 2221075 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 2229105 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 2229602 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile