RNA id: XM_039804162.1


Basic Information

Item Value
RNA id XM_039804162.1
length 1994
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC120561175
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3818322 ~ 3827427 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACCTAACAAGCAGATGGCTGATTCTCAGCCCCAGGACCAGCACCAGACCGACCCATATTCGCCGCGCTGTGTATTCTGGGAACACACAGTAGTTTCAAGATGGCGGCGAGCAGGAGGCTGGCCAAGGAACTTGAAGAGATTCGCAGGTCTGGAATGAAAAACTTCAGAAACATTCAAGTTGAGGAATCAAACCTATTGTCATGGCAAGGGCTCATTGTTCCTGACAACCCTCCTTATGACAAAGGTGCGTTCAGAATCGAAATCATTTTCCCCACCGAGTACCCTTTCAAGCCTCCCAAGATCACATTCAAGACAAAGATCTATCACCCCAACATCGATGAGAAGGGCCAGGTGTGCTTGCCCGTGATCAGCGCAGAGAACTGGAAGCCTGCCACCAAAACTGACCAAGTAATTCAGTCCCTCATTGCGCTGGTGAACGACCCCCAGCCGGAGCATCCCCTTAGGGCAGACCTAGCAGAAGAATACTCAAAGGACCGTAAAAAATTCTTGAAGAACGCTGAAGAGTTTACAAAGAAACACGGTGAAAAGCGGCCAATGGACTGATCACCTGACAAACGTGTagccctctctctgtctctttctccccctctcctcctatCTCACCTGCCCCACCAAAAACCAATCTCCCTCTCGCCCCCCTGCTCTCCCCCACACCTGACCACCTTCCCCGCTCACTCTCCTCCCCCCTTCTCCCCCACACCGGTCCTCCCTGCAGTCCAGGAGCTGCCCATCCTCAGCCTCCCTCCCCATCCAGGACTCTCTGTGGATCAGACagcttcctccacctcctcttaCTACTGCTCCTCCTCGGCCATAAATCTCCAGATCATTTCTAACTTTCTACTCTTTTCTTAATGTGAAAATGGAAAAGAAATGCTAAGGGAATATGATGTTCAAATGAAGTTAGATGGAAATACTGCCTAAtgtgttaaatttttctttgcGTTCCCTCTATATAAACAACTCTTTTGTTAAATAGATCTCACTTAAACATGATTTTTCTGAAatctgaaattttttttttttcagagcagTAAATCTGGTTAATCACTCCATTTTTTCTTTTGCCCTATCATCAATAATCTtgtaagcaaaaacaaacaaatgtgacAGAAAGAATGGAAGCTGTAGTTAGGACCTGGAGGTGTGTTTCCCTTACTCAACTCCACTGCTTCTAGAGTTGCACTGTACTCTGAGAcgaccccccgccccccccacaTCTACTTCCCCCAGTTTGCAACCCACTGAGCAGAAACAAACATAACAGGCCAAACACGAATTGAATTGGTATTGCTGAAAATGCTAGAGAAGATGCTTGAgtgttaaaaggaaaaaaaaaaaaaaaacttccaaacATGCAGACATAATTAGCAGGCCCTCAAAGACTATCCCCACATTTGATGGCGGGTTTTTGCAACACAGATCAGTTGACCTCTCTCAGGCTAAACCAGTTTTCAGCATGATAAATAGCTGTTGTGATATTCTTTTCCTTTTATTAATAACAATTTGCTTTCTCCACTTGAAATTGTTTGTGTGGCACTTGATATATAAAATTGGTAATGTGGGAAGAACCTGTTTGGTTAATTTGAATCTTCCAGGCATGTCTCCTCTCCCACTATCGGGCACCCCAATATAACCACCTATCACATTAGAACCAAGCCTTTACCACACTGAGACATATTCCAGTGGCAGTGGACTGTCAGCTGCTGAAAGGGACCTAACCtgttggggtgggggggatggGGGGAAGAGAAGCTGAAAAAGGGTGCACTCAGCTGGAATGAAGCTCAGCTCCTGGAGGTGGTCCTAGAATCAAGCACCATGAAGGCAGTTGGGAGAGGGCTGGCTGTCTGGGGATGTGTCCGGACATGGAAAGGGACTGCAGTGGCCAAAAACCACCATGTAACAGCTGTTTGATCTGGTCCCAATATTGTTTCATAATAAAGATGGCTAACCATTTGGCCTCACTGTC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K04552 UBE2L3, UBCH7; ubiquitin-conjugating enzyme E2 L3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79263 lncRNA upstream 15225 3799038 ~ 3803097 (+) True G58986
TU79211 lncRNA upstream 212013 3606062 ~ 3606309 (+) True G58948
TU79205 lncRNA upstream 262143 3547808 ~ 3556179 (+) True G58944
TU79200 lncRNA upstream 294701 3522846 ~ 3523621 (+) True G58941
TU79146 lncRNA upstream 295566 3521131 ~ 3522756 (+) False LOC120560521
XR_005639569.1 lncRNA downstream 9880 3837307 ~ 3837679 (+) True LOC120561177
TU79324 lncRNA downstream 63618 3891045 ~ 3891853 (+) True G59033
TU79323 lncRNA downstream 68243 3895670 ~ 3896241 (+) True G59032
TU79333 lncRNA downstream 133633 3961060 ~ 3961319 (+) True G59042
TU79389 lncRNA downstream 305421 4132848 ~ 4133064 (+) True G59093
XM_039803625.1 mRNA upstream 42649 3688045 ~ 3775673 (+) False arid3c
XM_039803627.1 mRNA upstream 44804 3688045 ~ 3773518 (+) True arid3c
XM_039804121.1 mRNA upstream 143097 3630736 ~ 3675225 (+) True mamdc2a
XM_039803133.1 mRNA upstream 270989 3525307 ~ 3547333 (+) True fam189a2
XM_039803134.1 mRNA upstream 270989 3525307 ~ 3547333 (+) False fam189a2
XM_039804168.1 mRNA downstream 21052 3848479 ~ 3868576 (+) False rad17
XM_039804172.1 mRNA downstream 21052 3848479 ~ 3868576 (+) False rad17
XM_039804174.1 mRNA downstream 21142 3848569 ~ 3865866 (+) False rad17
XM_039804167.1 mRNA downstream 21145 3848572 ~ 3868576 (+) True rad17
XM_039804169.1 mRNA downstream 21145 3848572 ~ 3868576 (+) False rad17
TU78941 other upstream 938578 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 3605952 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 289852 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 596714 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 604744 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 605241 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 702683 4530110 ~ 4531165 (+) False mrpl41

Expression Profile