RNA id: XM_039804172.1


Basic Information

Item Value
RNA id XM_039804172.1
length 2849
RNA type mRNA
GC content 0.49
exon number 17
gene id rad17
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3848479 ~ 3868576 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCGCAGACTTCCACAAACACTGCAGTAAACGGAGAGGCTTCGCGTCAGTTTTACGTCAATAGACAATCCGTTTGCGGCAATCCGAATCCCCGGAGTTTAAAAAGGTTCCCAGTTGGTCGATGAACTGCTCCCCTCAATGTGAAGCACCGCGGGGAAGGATGGACAAGCTTTCTGTGGCAGATAAAGCTGCTTCAAGCAAACTGAACCGCTGGGTGGATCCGTCCTTCACTGATTTGCCAGGGGAAAGCTTTGCTCCGTCGAGAAGGAGAAAGGGCAGCCAGGTTTTGTGCCCCAAGGCTGAGCCGAAGAGGCCCAGGAAGAGGACCAAAGATGCGGGCAGCTCGGAGCCTTACACGTCCTACCTGCTGAAAGAGCCGGCCCAGAGGGACCAGGATGAGTCCTGGGTGGACAGATACTCGCCCCGTTCACAGgctGATCTAGCTGTCCACAAGAAGAAGATAGAGGAAGTGGAGAACTGGATGAGAGTTCACTCAAACGCATCAAAGGGTGGTATCTTGCTGCTGACGGGACCATCAGGCTGTGGAAAGACTGCCACAGTCCAGGTTTTGTCTCGAGAGCTGGGCCTCAGGGCTCAGGAGTGGACCAACCCCTCCAACCCGGAGCCATACAGCAGCAGCCAGCATGAATGGAGGACGAATGGTTTCCCCTGCAGCTCCCAGTTAACCCAGTTCCAGGACTTCCTCCTCAGAGCAAACAAGTACAACTGCCTGAAGATGTTGGGTGATGGAGGAACTACAGACAGAAAGCTCATCCTGGTGGAGGATTTCCCAAACCAGTTCTACAGGCAGCCTGGCAGCCTGCATGATATCCTGAGGCGCTTTGTGAAGACGGGTCGATGTCCCCTGGTGTTCATAGTGTCCGACAGTCTGAGTGGAGACAGCAGCTCGCGCTTTCTCTTTCCCAGAGAGATCCAGGAGGAGCTGGACATCAGCAGCATCAGTTTTAATCCGGTGGCTCCAACCACGATGATGAAGGTCCTGACTCGAGTTTCAACGCTGGAGGCGGGAAAGCAGAGCTGTGGGAGGATGTGCGTCCCAGACCAGGCAGTGTTGGAGACGCTGTGTTCAGGAAGCTCGGGAGATATTCGCAGTGCCATCAACAGCCTCCAGTTCTCCTCCCTCCCAGACTCGTCATTGGAAAAAGGTCTGGGGAGGATGAAGGACAGGCAAACTTTGCTGGGCAAAGCTGTTTCCAGAACAAACCAGAGGAAGAAGAAGTCCAGACTGACAAAGGAGAAGGATGAGGAGCAGGCTATTGGAGGGAAAGATGCTTCTCTGTTCCTGTTCAGAGCACTGGGGAAGATTCTGCACTGCAAGCGAGGGAAACATGAAGGTGCCGAAGCAGCTGAATGTGACACTGGACCTGGTCTACCATCTCACCTGTCTCACCATCACAGAGAAGCATTACTTGTAGACCCTGAGctgGTTGTTGAGCGTTCCCACATGTCTGGAGAGTTCTTCAACCTGTACCTGCACCAGAACTACGTGGACTTCTTCTCTCAGTTGGAGGACGTGGACCGAGCCAGCGAGTATCTGTCTGACGCCGACCTCCTCACTTCTGATTGGACGAGTCGCAGCACCATGGTCCATTATGGGTCTTCAGTGGCCACCAGGGGGCTCCTTCACTCCAACTCTCAGCAGGTTTCTGTAGGCTTCAGACCTCTTCACAAACCCAACTGGCTGCTGGTCAACAAAAAGCACCGAGAGAACTGCCTGGCTGCCCAGTCGCTGTTCAGGAGCTTCTGTCTGACACCAGTCAGCCTGCAGACAGAACTGCTGCCATACCTGGCCCAACTCACCAACCCTATGAGGAAccaagCTCAGATAGCTTTTATCCAGGATGTGGGTCAGATGCCACTGAGGAGGTTCCCCGGCAGattaaAACTGGAGGCTCTGACAGACAAAGACCCAGCCCAGCTGGAGAGAGACagcgaggaggaagaggagggtccGGCTGGGGTTGCGGAGGGTCCGGGGGGGGTTGAGGAGGGTCTGCCTGCCAGTCAGCCCCAGCCCACTACAAGCCATGGCCTGTTGGAGGAGGAGGACCTGCTCATTGAGGACTATGCCAGTGactaacacacactcactgtccTACTGGGACACAGTTTCACTCTGTCATTGTTAACTATTTTGTtgtatggttttttttttttcttcataattcAGTTTTGGCTTAGTATGGAGAAAGATTAGCGCCAcgtcataaaataaataacaaaatgatTTTTGAGATGGATTTTTGATATATGAGGAAAAtcattgttactgttaaaaagttgttatgcTTTTTCCCCCCGAATAACCTTTtgagaattctgacttttttcacaatTGTATGATTCCAGACCTAATAATTCTTCACATAACCATACTCCAAAGTAAGTTGATGTCTGTGATTATAGCTCTGGTATTACCAGTATTTTTGCCTTATTAAGGTGTGATCTGTACAACATatgttactttttcaaacaagCCTGTCGTCTTGTAGAACCTGAGTTGAATGTGATTCTATAGCTTGAACAGGCTCATAACAACATGAAAGCATGGGGATTAATTGTGATAATCTCCTTTAACAGTTCAGTTGTACCACTTGAATTATTGTcactatttatttgttttagatGCATGTTCAGCACTTGTTCTTCATCTTATTGTTTTGCTGAGTGACTGTTGAGCCTAGATCAACCTGTAATGGagatctctgtttttttttactgttaccCATTGATGGAcggaaaataataaatattacaatAAATGCTTATTGAGGCTTAACTTGCTTGAATCTAAATAAGcatatgaataaaaataatgtgtGAAACGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639569.1 lncRNA upstream 10800 3837307 ~ 3837679 (+) True LOC120561177
TU79263 lncRNA upstream 45382 3799038 ~ 3803097 (+) True G58986
TU79211 lncRNA upstream 242170 3606062 ~ 3606309 (+) True G58948
TU79205 lncRNA upstream 292300 3547808 ~ 3556179 (+) True G58944
TU79200 lncRNA upstream 324858 3522846 ~ 3523621 (+) True G58941
TU79324 lncRNA downstream 22469 3891045 ~ 3891853 (+) True G59033
TU79323 lncRNA downstream 27094 3895670 ~ 3896241 (+) True G59032
TU79333 lncRNA downstream 92484 3961060 ~ 3961319 (+) True G59042
TU79389 lncRNA downstream 264272 4132848 ~ 4133064 (+) True G59093
TU79435 lncRNA downstream 439343 4307919 ~ 4329460 (+) True G59132
XM_039804162.1 mRNA upstream 21052 3818322 ~ 3827427 (+) True LOC120561175
XM_039803625.1 mRNA upstream 72806 3688045 ~ 3775673 (+) False arid3c
XM_039803627.1 mRNA upstream 74961 3688045 ~ 3773518 (+) True arid3c
XM_039804121.1 mRNA upstream 173254 3630736 ~ 3675225 (+) True mamdc2a
XM_039803134.1 mRNA upstream 301146 3525307 ~ 3547333 (+) False fam189a2
XM_039802090.1 mRNA downstream 457 3869033 ~ 3889655 (+) True ccdc125
XM_039802089.1 mRNA downstream 457 3869033 ~ 3889655 (+) False ccdc125
XM_039802091.1 mRNA downstream 457 3869033 ~ 3889655 (+) False ccdc125
XM_039804152.1 mRNA downstream 330947 4199523 ~ 4208499 (+) True si:dkey-3h3.3
XM_039804151.1 mRNA downstream 332275 4200851 ~ 4208499 (+) False si:dkey-3h3.3
TU78941 other upstream 968735 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 3636109 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 248703 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 555565 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 563595 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 564092 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 661534 4530110 ~ 4531165 (+) False mrpl41

Expression Profile