RNA id: XM_039804174.1


Basic Information

Item Value
RNA id XM_039804174.1
length 2797
RNA type mRNA
GC content 0.48
exon number 15
gene id rad17
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3848479 ~ 3868576 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGGAGTTTAAAAAGGTAAACTTCACTGCATCATCATATCTCCTTCAACTTCGACTTTAGTAATATCAACGCTACTCCCTCTTTGAGTTACACATTAGTTCTCACTGCGCCCGAACAAAAAGCTTAAAGTGACGGAAACAACGTGTGGGCTTCTCACACATCAAATGGTCAAAACAAGGTTCCCAGTTGGTCGATGAACTGCTCCCCTCAATGTGAAGCACCGCGGGGAAGGATGGACAAGCTTTCTGTGGCAGATAAAGCTGCTTCAAGCAAAGTGAGTTCTCTAACGCTGAACCGCTGGGTGGATCCGTCCTTCACTGATTTGCCAGGGGAAAGCTTTGCTCCGTCGAGAAGGAGAAAGGGCAGCCAGGTTTTGTGCCCCAAGGCTGAGCCGAAGAGGCCCAGGAAGAGGACCAAAGATGCGGGCAGCTCGGAGCCTTACACGTCCTACCTGCTGAAAGAGCCGGCCCAGAGGGACCAGGATGAGTCCTGGGTGGACAGATACTCGCCCCGTTCACAGgctGATCTAGCTGTCCACAAGAAGAAGATAGAGGAAGTGGAGAACTGGATGAGAGTTCACTCAAACGCATCAAAGGGTGGTATCTTGCTGCTGACGGGACCATCAGGCTGTGGAAAGACTGCCACAGTCCAGGTTTTGTCTCGAGAGCTGGGCCTCAGGGCTCAGGAGTGGACCAACCCCTCCAACCCGGAGCCATACAGCAGCAGCCAGCATGAATGGAGGACGAATGGTTTCCCCTGCAGCTCCCAGTTAACCCAGTTCCAGGACTTCCTCCTCAGAGCAAACAAGTACAACTGCCTGAAGATGTTGGGTGATGGAGGAACTACAGACAGAAAGCTCATCCTGGTGGAGGATTTCCCAAACCAGTTCTACAGGCAGCCTGGCAGCCTGCATGATATCCTGAGGCGCTTTGTGAAGACGGGTCGATGTCCCCTGGTGTTCATAGTGTCCGACAGTCTGAGTGGAGACAGCAGCTCGCGCTTTCTCTTTCCCAGAGAGATCCAGGAGGAGCTGGACATCAGCAGCATCAGTTTTAATCCGGTGGCTCCAACCACGATGATGAAGGTCCTGACTCGAGTTTCAACGCTGGAGGCGGGAAAGCAGAGCTGTGGGAGGATGTGCGTCCCAGACCAGGCAGTGTTGGAGACGCTGTGTTCAGGAAGCTCGGGAGATATTCGCAGTGCCATCAACAGCCTCCAGTTCTCCTCCCTCCCAGACTCGTCATTGGAAAAAGGTCTGGGGAGGATGAAGGACAGGCAAACTTTGCTGGGCAAAGCTGTTTCCAGAACAAACCAGAGGAAGAAGAAGTCCAGACTGACAAAGGAGAAGGATGAGGAGCAGGCTATTGGAGGGAAAGATGCTTCTCTGTTCCTGTTCAGAGCACTGGGGAAGATTCTGCACTGCAAGCGAGGGAAACATGAAGGTGCCGAAGCAGCTGAATGTGACACTGGACCTGGTCTACCATCTCACCTGTCTCACCATCACAGAGAAGCATTACTTGTAGACCCTGAGctgGTTGTTGAGCGTTCCCACATGTCTGGAGAGTTCTTCAACCTGTACCTGCACCAGAACTACGTGGACTTCTTCTCTCAGTTGGAGGACGTGGACCGAGCCAGCGAGTATCTGTCTGACGCCGACCTCCTCACTTCTGATTGGACGAGTCGCAGCACCATGGTCCATTATGGGTCTTCAGTGGCCACCAGGGGGCTCCTTCACTCCAACTCTCAGCAGGTTTCTGTAGGCTTCAGACCTCTTCACAAACCCAACTGGCTGCTGGTCAACAAAAAGtacgcctatgcacccccactaagctggaacaagttttaaacagtaagtgaatacagcgtgtcgggggaATACAACGTCTATAGACAGTATACTACAGCGGGGGGGTCAAAGGCAGAGAACCGtagggttagctaacgttagctgttcccagacaactgagttggttttgcctttttttgctcaccaaacgctgctgccatctttactcgcgctgagtttttaaattccagcggatgatatgcacacgacttgcctccctgactggcttcgggaGGGGCGGATGTGCACGTAcgcgtgtcattcagaacacaagacaaaataagagtgttcttgcaaaacagaacatgaaAAAATTATcgtttttttctcgattatactattttggtgatcgttgggagccaaaatcgaaatcgaaattcaattaattgcacagccctagggTAACTGACAGAGTAATGCGAGATTCATGAGcaagatatatactgtatatatatccaTGTCATTTATATATGGTGGAGTAATGGTTTTACTCCAGTTATGAATTACATGGATCACAGATTTGTGGCTGTGTTTTAGTTGTTAAAATAGTGATGTGATATATGATGAGGAGTTGTGCAGACTGTTTAttcactcgctgtctgtcagctgctcatatAGAAAACCAATACATttggtgttgctccattatttctaAGACGAGGATGTGTTTAGATAATTGTTAAATTGGTTTGAgttctttttttatgaaaaaaaaaaaaagttaaaaaattctcttattattattatttatagaccaaacaactaatcgattaatcaagaaaataattgacgGATTAATGGACTATGAAATAAtcgttagctgcagccctagaatGGATCAGTGTTGTAGATCAGCTTCCTCTAATGTGTCTCATGTGGAAGTAGACTTTAAATCTAGCAGCGGTAGATCATTTGAGATGGTAATGAGAGGGATACTGTTCTGATGTTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639569.1 lncRNA upstream 10890 3837307 ~ 3837679 (+) True LOC120561177
TU79263 lncRNA upstream 45472 3799038 ~ 3803097 (+) True G58986
TU79211 lncRNA upstream 242260 3606062 ~ 3606309 (+) True G58948
TU79205 lncRNA upstream 292390 3547808 ~ 3556179 (+) True G58944
TU79200 lncRNA upstream 324948 3522846 ~ 3523621 (+) True G58941
TU79324 lncRNA downstream 25179 3891045 ~ 3891853 (+) True G59033
TU79323 lncRNA downstream 29804 3895670 ~ 3896241 (+) True G59032
TU79333 lncRNA downstream 95194 3961060 ~ 3961319 (+) True G59042
TU79389 lncRNA downstream 266982 4132848 ~ 4133064 (+) True G59093
TU79435 lncRNA downstream 442053 4307919 ~ 4329460 (+) True G59132
XM_039804162.1 mRNA upstream 21142 3818322 ~ 3827427 (+) True LOC120561175
XM_039803625.1 mRNA upstream 72896 3688045 ~ 3775673 (+) False arid3c
XM_039803627.1 mRNA upstream 75051 3688045 ~ 3773518 (+) True arid3c
XM_039804121.1 mRNA upstream 173344 3630736 ~ 3675225 (+) True mamdc2a
XM_039803134.1 mRNA upstream 301236 3525307 ~ 3547333 (+) False fam189a2
XM_039802090.1 mRNA downstream 3167 3869033 ~ 3889655 (+) True ccdc125
XM_039802089.1 mRNA downstream 3167 3869033 ~ 3889655 (+) False ccdc125
XM_039802091.1 mRNA downstream 3167 3869033 ~ 3889655 (+) False ccdc125
XM_039804152.1 mRNA downstream 333657 4199523 ~ 4208499 (+) True si:dkey-3h3.3
XM_039804151.1 mRNA downstream 334985 4200851 ~ 4208499 (+) False si:dkey-3h3.3
TU78941 other upstream 968825 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 3636199 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 251413 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 558275 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 566305 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 566802 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 664244 4530110 ~ 4531165 (+) False mrpl41

Expression Profile