RNA id: XM_039804183.1


Basic Information

Item Value
RNA id XM_039804183.1
length 3810
RNA type mRNA
GC content 0.42
exon number 8
gene id paqr3a
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 33779007 ~ 33790810 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCAGGCAGTCTTTTGGGACAGCGGAGGGGTCCGTTACTGATGACGTCTCTGGTGATTTGGAAGATGTTGTAGCCGAAACTTGATGCACTGCGTTGTATATTAAATTAATGTTaatatatttaaacaaatgcGTAGTACGTACTATAAGCCACACAATGCAACAAATTGCACATATACAAAATTGAAAGTTTCAGGTCCGACTAAAACAGACTCCTCCAGCCCAGCCATGCCTCAGAAACCCCAAAAGAGCGCCCAGACTTCACACTACATTGAGCTGGGAGGTTATCAGTACTGGCCTGTGCTGGTGCCCCGAGGTATCAGACTGTACACCTACGAACAGATCCCAGTGTTTCTGAGGGAGAACCCCTACATCACAGATGGATACAGAGCCTACCTGCCCTCCAGACTGTGCATCAAAAGCCTCTTCATTTTATCCAATGAGACGGTAAATATCTGGAGCCATCTGTTGGGTTTCCTGCTCTTCTTCTTTGTCGGGGTTTACAACATGGTCTCAGTGCTGCCGGCCATCGGTGCCTCTAAAGAGGACTACGTCATCTACTGCATCGGACTCTTCTGCTTTCAGCTGTGTATGCTGTGTTCGGTGGGTTATCACCTTTTCTGCTGCCACCGCTCAGAGAAGACCAGCCGCCGCTGGATGGCGCTGGACTACGCGGGGGTTTCCATTGGCATTCTGGGCTGCTATGTCCCTGGAGTCTTTTACACTTTCTACTGCAATAATTACTGGCGGCAGGTGTACCTGGTGACGGTCCTGGCCATGATCCTGGCGGCCTTCTTCGCTCAGATCCACCCTCATTACCTCAGCAAGCAGTGGAAGCAGCTGCGCTCGCTCATCTTCTGCGTGGTGGCCGGATACGGCCTCATCCCCACCGTCCACTGGATCTGCATCACTGGCGGCTTCTCTTCAGAGCTCGTCCAGGCTTTTGTTCCTCGAGTCCTGGGGATGTATTTCATCGCTGCATTAGCTCTCATTTTCTACGTTTCAAAAGTTCCTGAACGCTACTTCCCGGGTCAGCTGAACTACCTGGGCTCCAGTCACCAGGTGTGGCACCTGCTGCTGGTGCTGATGTTTTACTGGTGGCACCAGTCGGCGTGCTTTATCATGTCGTACAGGCACAGCCAGCCGTGCCTCGACGCATCCCACCACGCCTAGGACGCTGCTCTCAACGCTGAGATCCCTGACTCTGTCAAACTgGTGGTGAATGGCTGCAGTGTATTCCAGCATGCACAGGTACAAGGCGAGGAGACACCATGGACAGGCCTTCAGTCCATCTCAGTGTCCCCACAGATGGACACATCAGCACCTGTCTTCAGTCCACCTGACCTGTGGAGGAAACCATCAGAGGGGCTGCAAACGGGAATCAGGCCTGTGACCCCCGGGATGAGAGGTGACACatgttgagtttgtttttaAGCTAAAACGGGACCTGTGGTTGAAACGAACACATTTTTTACCATCTTATCACCAGAAACTCAACTCAAACTATAAAATCTCCAGAATTTTCACTGCATCCCAATTTACATAACTGTAAAAGCAGCTTTCATCACCGATGCagcggcaaaaaaaaacaagactcaAATCAGtagcatttcctttttttataaGAGATCATGTTTTCTCTAAGTGCCTGTTAGTGAAACATCATGTAAGTCTGGTTCTGTAAAGGTTTGCTCTGAAGGCCCAATATCTCAACTAAttcactcatttttttttttaaaggtttaccTACAGTGGTTCTCAATCTGAGAGGTGTCCCCCCAAATCTATTTTGAATATAGTTCCACTTTATGATGATGCTTTTAAAAACAGCTTGTTCTGCCTGTAGGCTTCCTTCATTAAGTAATCAAGTAAAATGACCTTAAAAGGGAAACTTAAGTGTTTTAATGTCAACCCTCTGCACAGATGTTCAAAGTATGTGTGGAAATCTGTTTTTACAGTGTTAAGAGCTGTGGAGCTCGACCCAAATCATTTCTAACAGATTCATTTTATTTCCTAACTACTAGTCGTACAAGTTGTTTGTGGTGAAACTGTTAGGTATTTCCTAATGAGAACAAGCAAAAACTAACCAGTAATTAATTCATGTTTAGATAGGAAAACCAAAGACCGCTGTGGAGCAAAGCTCAATATGCTCATCAGTTTACATCACATTTTGATTGTTAATTTTGTCCATGAGTGTGCACAGTATTGATGTGTCTCACTGCTGAGAGACAAcagattgtttgttttaatcccAGGGTGGTGAAATGTACTTATTCTAAATACAGATACTACACAGAATCATGAGCTGTACAAGTACCTGGTCCTCCAGAATGTaatgcttttcttttcatgtattGGGGCTGCAATGCCTCAGTTCATCCTGGCATTTATATCACATCTGCACAGGATGTTTAGAGGGGAACAGCCTCAGTGTTCACTACTGGAATGTTTTCTTTGAGAAGTGTTTAAGTccagtttatttaaaaactgCGCTGAACCCCCTACGTTATTAAATAGTTTCTCGCTCTCATatcttcattttattatttttcggCACTAACCAGTGAAAGTTGAGACTTATTCAAATGGTGAGTGGTCAGCACGGCCTCTAGTGGCTGCTAGTAAGACTTTTAGGCCTTTTTTAAACTGTGTCCCAATTCTAAACTGATACTTGATACATGACTACACATGTTGACTTACATGTTGCATTACAAACTACATTTATTTCTTGAACACTAAAAGATAACTGTATCGTTTAGTCTACgtaacatacatactgtataggtAACTGACAAAAAGTTTCAGTTGCCTATATGTATCAGTGTTTAGCCACCTGCACTACACTGTCTCTACATGTGTATTGTGTATACTAACTGAAAATGATACAAGGCTTCAGccaatttcactttttttgagcGGTCTGGAGATGTAGCACCATTCACAATTTTCAACTCTTCTTTACAGCAGTGAGAAAATCCTTTCCATTTAAAAGTGATGTATTCTGCCATGTTACTGTAATTAATTTCAAGTAAGAATTAGTTTGAAGTTGGGACAcagttgtttttaaagattaaagcactgatttaacattttttaaatctgtatCCACGTGCATTGTAGTTCATATTGCAATGACTTTTCCCCACACTGTACATTCAGATGACTTTACTTTTTCTCTCTATAGTTTAGTACTGTAGTAACAACTGTTTAACTGCTTTTTCTGCCTGAAGTGAACTTTCGTTCAGACACCGTACTATTTCTCCAGCTCACTTAGGGTGATGTGCAATGTTAAAGGTCAACTGGTTTGTTATTGAATTGCTTCATTCCAAAATGCAACACAACCATGGTGGACAGAAGTCCTATTTTAACTTCAATGCTCAGAATTtcaaaacaaatgtttaaatgatCTCAAATGTTAGTTTTGGACTTTTGACTCTTAATGTTCATGCATTTCTGCTTGTCATTGTTTAATTACAATATCCAGTTAAATGGTAGCGGTCTCATTTTGGaatgaaagtcttttgtttgttttgtgtgtaataTTCAGTGTTTAAGTTTTAGGCCGATGACAAAATGTTCTCTAGTGTTAAGATTTCAGATTGCTTTTGTTGTTCTGTATTTAAATTATTCATTGTGAACCTGCTCTGTACTGTTtgtaaacatgttttctttgatAAGCTCTAAGAGACATCGGCTGTGTGTCTGACTCGTTTTGTAGCAGCGGAAATTTTGTATCTTGTCTTTTCATACCTGAGCAATCAAACTGCTGAACTTGACTCTAAATAAAATTTAACCATGTACTGTTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639570.1 lncRNA upstream 6475 33769844 ~ 33772534 (+) True LOC120561187
TU89072 lncRNA upstream 23054 33755569 ~ 33755955 (+) True G66571
TU89069 lncRNA upstream 53227 33725520 ~ 33725782 (+) True G66568
TU89049 lncRNA upstream 175422 33601637 ~ 33603587 (+) False antxr2a
TU89021 lncRNA upstream 426059 33351699 ~ 33352950 (+) True G66522
XR_005639406.1 lncRNA downstream 85365 33876175 ~ 33877007 (+) True LOC120560041
TU89177 lncRNA downstream 397020 34187830 ~ 34281929 (+) True G66652
TU89217 lncRNA downstream 640132 34430942 ~ 34439928 (+) True G66689
TU89223 lncRNA downstream 665680 34456490 ~ 34456749 (+) True G66692
TU89226 lncRNA downstream 695728 34486538 ~ 34486751 (+) True G66695
XM_039804107.1 mRNA upstream 175384 33517600 ~ 33603625 (+) True antxr2a
XM_039804106.1 mRNA upstream 205683 33517599 ~ 33573326 (+) False antxr2a
XM_039803542.1 mRNA upstream 434994 33303339 ~ 33344015 (+) True prkg2
XM_039802790.1 mRNA upstream 484908 33259709 ~ 33294101 (+) False rasgef1ba
XM_039802791.1 mRNA upstream 526602 33248404 ~ 33252407 (+) True LOC120560373
XM_039803019.1 mRNA downstream 379665 34170475 ~ 34187620 (+) True cnot6l
XM_039803801.1 mRNA downstream 482137 34272947 ~ 34280255 (+) True slc25a25a
XM_039803434.1 mRNA downstream 490169 34280979 ~ 34289653 (+) True zdhhc12a
XM_039803435.1 mRNA downstream 490169 34280979 ~ 34289653 (+) False zdhhc12a
XM_039803312.1 mRNA downstream 519290 34310100 ~ 34314260 (+) True LOC120560630
TU89079 other upstream 2611 33775925 ~ 33776398 (+) True G66578
XR_005639474.1 other upstream 666193 33077246 ~ 33112816 (+) False cds1
unassigned_transcript_266 other upstream 1207250 32571688 ~ 32571759 (+) True trnap-ugg
TU88651 other upstream 1409025 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 1449019 32322507 ~ 32329990 (+) True G66256
XR_005639528.1 other downstream 723200 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 975136 34765946 ~ 34773700 (+) False LOC120561070
TU89401 other downstream 1070689 34861499 ~ 34864266 (+) False G66832
TU89402 other downstream 1070689 34861499 ~ 34864266 (+) False G66832
TU89404 other downstream 1070689 34861499 ~ 34864266 (+) False G66832

Expression Profile