RNA id: XM_039804190.1


Basic Information

Item Value
RNA id XM_039804190.1
length 1678
RNA type mRNA
GC content 0.41
exon number 6
gene id cdo1
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 25567704 ~ 25573107 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGCCACTGCAGAAAGTTGGTAAGAGAAACCTTTTGTTTTAGCTGAACAGAAATATCTGCGAAATAACCTTCTGCAGAGAGATGGAGCACACCGAGGTGGTGAAGCCAGAAACTCTGGATGACCTGATCAAAATCTTGCATAAAATCTTCGAGAGTGACAGCATCAATGTTGAGGAGGTCCAAGGCATAATGGAAGCATATGAGAGCAATCCTCAGGACTGGGTGAAATATGCAAAGTTTGACAAATACAGcACCTTTGATGGCTGCTCTAAAAAGTCAAACTGCACTTGGAAAAACAGGTACACAAGGAACTTGGTTGATGAGGGTAACGGAAAGTTCAACCTCATGATTCTGTGCTGGGGAGAAGGCCACGGCAGTAGCATCCACGACCACACAGACTCCCATTGTTTCATGAAGCTGCTGCAGGGTCAACTAAAGGAGACGCTGTTTGAGTGGCCGGACAGTAAATCACAAGGAGAAATGGTCCAGAAGTCACAGAGAATTCTCCAAGAAAACAAGGTTGCTTACATAAACGACTCCATTGGCCTACATCGTGTGGAAAATGGCAGCCACACAGAGTGTGCAGCCAGTTTGCACCTGTACAGTCCCCCTTTCCAGTCCTGCCAGACATTTGACCAGCGGACGGGGCACAGGAACACCGTCAAGATGACCTTCTGGAGCAAAAAGGGCGAGAGGACTCCATTTGAAACCACATTCTCACAAGAGAACAACTAATAGTCACCAAAGGAGGCTCCAGATGAGGAAGACAGTTgtgttgaaatgacaatgttGTAAAATTGATTCAAGGGAAACTGCTTGGGAAGCAAAATGTGGACCTACTATGACTAAGCAACCCATTTAAAAAATCAGGAGCGGGCCGGTTCAAAAGGACAACTCAGTAATTAGAATGGCTTTATCGCTGCCCAGTGTGAGCTTGGCAAATACTGATGAGCACAGGACGAATGCATGAATAGGCTTGGACATGGATTGAATCTGCCTTTTGTTTGCTAGGCCTGAGGAGACCCTTTTCCAATAACAACATTCCTGTCCAGCCACGACCTGTGTAACAACACTTTTGAAAAATTATGGCCCATAGTCAAAGAGCTGAGCTTTGGCATTTTCAAAAAGGGGGGGATATATTGTAATAGTGTTTAAATTTCATATCTCAAGAAAAGGAAAATAGTAAATGATGGAGCATTTTTATAGCTGTATTTACTGTCAATTTAGACCACTCAAAATTGTCTTAACACCTGTTGAAAATTGTGATGATGTAACATTGTTTGTATAATCTAATTAACAAAAAGTTTGTTCCATTTGCATTtggaaaaagaaatgtaaagctttagagttgtgttgtttttaaaagtgctaTGGTTGTAATTTATTTGCAGGGAAGAGAGTGTTTGAATCGGCAAGCTTCCGTGTTACTCCTTAATGTATTCGTACTTAAGTTTTGACCAAGAAAGTCTTTTGTATTATTAGCAGACAATATGTTCAGTTAAAACACATACCTTTTCTCAGGATTTTGGCATATTTTTAATTGTAGCTGTATttatagtgtgtagtttttaCAGCATAGCATAGCACTGTCAAATGCATAAGTGATTTCTGTGATGCAGTAAATGATAAATCTGGCCATAACTGTAGACCATTAAACACCATTACCCTTTcacagaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046439 L-cysteine metabolic process biological_process
GO:0005506 iron ion binding molecular_function
GO:0017172 cysteine dioxygenase activity molecular_function

KEGG:

id description
K00456 CDO1; cysteine dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86363 lncRNA upstream 11923 25552939 ~ 25555781 (+) True G64495
XR_005639499.1 lncRNA upstream 15440 25548023 ~ 25552264 (+) True LOC120560635
TU86357 lncRNA upstream 16207 25548151 ~ 25551497 (+) False LOC120560635
TU86352 lncRNA upstream 61136 25506164 ~ 25506568 (+) True G64489
TU86313 lncRNA upstream 264784 25259716 ~ 25302920 (+) True G64450
TU86472 lncRNA downstream 89920 25663027 ~ 25663385 (+) True G64578
TU86493 lncRNA downstream 123956 25697063 ~ 25699784 (+) True G64592
XR_005639536.1 lncRNA downstream 140803 25713910 ~ 25747889 (+) True LOC120560927
TU86515 lncRNA downstream 215350 25788457 ~ 25795441 (+) True G64607
XR_005639405.1 lncRNA downstream 266029 25839136 ~ 25843093 (+) True LOC120560032
XM_039803025.1 mRNA upstream 122564 25336024 ~ 25445140 (+) True sema6a
XM_039803026.1 mRNA upstream 122564 25336024 ~ 25445140 (+) False sema6a
XM_039803027.1 mRNA upstream 122564 25336024 ~ 25445140 (+) False sema6a
XM_039803497.1 mRNA upstream 308535 25233215 ~ 25259169 (+) True hsd17b4
XM_039803496.1 mRNA upstream 308535 25233498 ~ 25259169 (+) False hsd17b4
XM_039803262.1 mRNA downstream 28049 25601156 ~ 25622051 (+) True LOC120560598
XM_039804389.1 mRNA downstream 52897 25626004 ~ 25645818 (+) False spef2
XM_039804387.1 mRNA downstream 52898 25626005 ~ 25646477 (+) True spef2
XM_039804390.1 mRNA downstream 52898 25626005 ~ 25646477 (+) False spef2
XM_039804388.1 mRNA downstream 52898 25626005 ~ 25646477 (+) False spef2
XR_005639471.1 other upstream 733073 24823718 ~ 24834631 (+) False cdc14b
XR_005639472.1 other upstream 733084 24823719 ~ 24834620 (+) False cdc14b
TU85875 other upstream 1874413 23692662 ~ 23693291 (+) True G64108
TU85622 other upstream 2637499 22929899 ~ 22930205 (+) True G63905
XR_005639510.1 other upstream 3968905 21588876 ~ 21598799 (+) False LOC120560787
TU86491 other downstream 111865 25684972 ~ 25696570 (+) False LOC120561182
TU86550 other downstream 341275 25914382 ~ 25915529 (+) False LOC120560031
TU86770 other downstream 839762 26412869 ~ 26414597 (+) True G64814
TU86790 other downstream 921228 26494335 ~ 26496386 (+) False c6h22orf39
TU86791 other downstream 921228 26494335 ~ 26496328 (+) False c6h22orf39

Expression Profile